Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : RM 378 | Genbank acc : NC_004735 | Aclame index mge :123

Category to which the Query Phage was assigned :

The queried phage was recognized as a Myoviridae of Type2 (Read more about that Type)
Note that only the Adaptor was detected unambiguously

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 146

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	141	lcl\|Aclame:protein:vir:5942\|NCBI_annot:similar	HHsearch (proba=100.00%)
Portal	38	lcl\|Aclame:protein:vir:5839\|NCBI_annot:similar	HHsearch (proba=100.00%)
TermL	66	lcl\|Aclame:protein:vir:5867\|NCBI_annot:similar	Blast (e-value=0)
MTP	NOT FOUND
Sheath	32	lcl\|Aclame:protein:vir:5833\|NCBI_annot:similar	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	89	lcl\|Aclame:protein:vir:5890\|NCBI_annot:hypothetical	HHsearch (proba=97.93%)
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:5942 protein:vir:104915 protein:vir:103181	RM 378 P-SSM2 Syn9	85 % 27 % 26 %
Portal	protein:vir:5839 protein:vir:106999 protein:vir:5665	RM 378 S-PM2 KVP40	100 % 22 % 22 %
TermL	protein:vir:5867 protein:vir:104946 protein:vir:104536	RM 378 P-SSM2 P-SSM4	100 % 29 % 28 %
Sheath	protein:vir:5833 protein:vir:101187 protein:vir:98824	RM 378 44RR2.8t Ma-LMM01	100 % 21 % 21 %
Ad2	protein:vir:100534 protein:vir:5657 protein:vir:7198	25 KVP40 T4	23 % 27 % 23 %