Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 161 lcl|Aclame:protein:vir:105148|NCBI_annot:hypothetical HHsearch (proba=99.21%)
Portal 167 lcl|Aclame:protein:vir:105154|NCBI_annot:conserved HHsearch (proba=100.00%)
TermL 168 lcl|Aclame:protein:vir:105155|NCBI_annot:conserved Blast (e-value=0)
MTP 157 lcl|Aclame:protein:vir:105144|NCBI_annot:hypothetical Blast (e-value=1e-150)
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 159 lcl|Aclame:protein:vir:105146|NCBI_annot:hypothetical HHsearch (proba=74.22%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.





Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:4606
protein:vir:81108
protein:vir:80010
PVL
tp310-1
tp310-3
13 %
12 %
12 %
Portal protein:vir:105154
protein:vir:572
protein:vir:3843
C-St
SPBc2
phi adh
100 %
39 %
13 %
TermL protein:vir:105155
protein:vir:573
protein:vir:5867
C-St
SPBc2
RM 378
100 %
28 %
20 %
MTP protein:vir:105144
protein:vir:562
protein:vir:99223
C-St
SPBc2
DMS3
100 %
19 %
13 %
Tc1 protein:vir:78648
protein:vir:96972
protein:vir:9364
tp310-2
42e
phi 12
18 %
18 %
18 %