Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 85 | Genbank acc : NC_007050 | Aclame index mge :1654

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 78

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	7	lcl\|Aclame:protein:vir:97148\|NCBI_annot:ORF010\|genbank:acc:YP_239726;genbank:gi:66394880;genbank:Gen	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:97171\|NCBI_annot:ORF006\|genbank:acc:YP_239722;genbank:gi:66394876;genbank:Gen	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:97165\|NCBI_annot:ORF008\|genbank:acc:YP_239721;genbank:gi:66394878;genbank:Gen	Blast (e-value=0)
MTP	12	lcl\|Aclame:protein:vir:97120\|NCBI_annot:ORF025\|genbank:acc:YP_239731;genbank:gi:66394894;genbank:Gen	Blast (e-value=1e-113)
Sheath	NOT FOUND
Ad1	9	lcl\|Aclame:protein:vir:97145\|NCBI_annot:ORF049\|genbank:acc:YP_239728;genbank:gi:66394913;genbank:Gen	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	10	lcl\|Aclame:protein:vir:97144\|NCBI_annot:ORF047\|genbank:acc:YP_239729;genbank:gi:66394911;genbank:Gen	HHsearch (proba=100.00%)
Tc1	11	lcl\|Aclame:protein:vir:97143\|NCBI_annot:ORF041\|genbank:acc:YP_239730;genbank:gi:66394906;genbank:Gen	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:97148 protein:vir:78830 protein:vir:103955	85 80alpha phiNM	100 % 99 % 99 %
Portal	protein:vir:97171 protein:vir:103951 protein:vir:96240	85 phiNM 69	100 % 98 % 98 %
TermL	protein:vir:97165 protein:vir:95761 protein:vir:94525	85 SMP phiJL-1	100 % 62 % 43 %
MTP	protein:vir:97120 protein:vir:78825 protein:vir:103919	85 80alpha phiNM	100 % 99 % 99 %
Ad1	protein:vir:78849 protein:vir:103957 protein:vir:97145	80alpha phiNM 85	100 % 100 % 100 %
Ne1	protein:vir:78858 protein:vir:103917 protein:vir:97144	80alpha phiNM 85	100 % 100 % 100 %
Tc1	protein:vir:103918 protein:vir:97143 protein:vir:96217	phiNM 85 69	100 % 100 % 100 %