Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phi 11 | Genbank acc : NC_004615 | Aclame index mge :165

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 53

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	34	lcl\|Aclame:protein:vir:9309\|NCBI_annot:head	HHsearch (proba=100.00%)
Portal	31	lcl\|Aclame:protein:vir:9306\|NCBI_annot:phi	HHsearch (proba=100.00%)
TermL	30	lcl\|Aclame:protein:vir:9305\|NCBI_annot:large	Blast (e-value=0)
MTP	39	lcl\|Aclame:protein:vir:9314\|NCBI_annot:structural	Blast (e-value=1e-113)
Sheath	NOT FOUND
Ad1	36	lcl\|Aclame:protein:vir:9311\|NCBI_annot:phi	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	37	lcl\|Aclame:protein:vir:9312\|NCBI_annot:phi	HHsearch (proba=100.00%)
Tc1	38	lcl\|Aclame:protein:vir:9313\|NCBI_annot:phi	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:96223 protein:vir:9309 protein:vir:78830	69 phi 11 80alpha	100 % 100 % 99 %
Portal	protein:vir:96240 protein:vir:9306 protein:vir:103951	69 phi 11 phiNM	100 % 100 % 99 %
TermL	protein:vir:96238 protein:vir:9305 protein:vir:103950	69 phi 11 phiNM	100 % 100 % 100 %
MTP	protein:vir:9314 protein:vir:97120 protein:vir:78825	phi 11 85 80alpha	100 % 98 % 97 %
Ad1	protein:vir:78849 protein:vir:103957 protein:vir:97145	80alpha phiNM 85	100 % 100 % 100 %
Ne1	protein:vir:78858 protein:vir:103917 protein:vir:97144	80alpha phiNM 85	100 % 100 % 100 %
Tc1	protein:vir:9313 protein:vir:78854 protein:vir:103918	phi 11 80alpha phiNM	100 % 98 % 98 %