Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : CGphi46 | Genbank acc : NC_021537

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 55

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	4	lcl\|NC_021537.1_cdsid_YP_008126539.1	HHsearch (proba=100.00%)
Portal	6	lcl\|NC_021537.1_cdsid_YP_008126541.1	HHsearch (proba=100.00%)
TermL	7	lcl\|NC_021537.1_cdsid_YP_008126542.1	Blast (e-value=3e-07)
MTP	52	lcl\|NC_021537.1_cdsid_YP_008126587.1	Blast (e-value=1e-128)
Sheath	NOT FOUND
Ad1	55	lcl\|NC_021537.1_cdsid_YP_008126590.1	HHsearch (proba=99.76%)
Hc1	NOT FOUND
Ne1	54	lcl\|NC_021537.1_cdsid_YP_008126589.1	HHsearch (proba=100.00%)
Tc1	53	lcl\|NC_021537.1_cdsid_YP_008126588.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:99424 protein:vir:8420 protein:vir:80376	BJ1 Omega phi644-2	30 % 18 % 16 %
Portal	protein:vir:99452 protein:vir:98567 protein:vir:267	BJ1 PSP3 K139	54 % 20 % 19 %
TermL	protein:vir:106508 protein:vir:79096 protein:vir:107886	phiAsp2 phiE255 BcepMu	21 % 16 % 16 %
MTP	protein:vir:99405 protein:vir:6245 protein:vir:95133	BJ1 phi-BT1 PA73	73 % 17 % 14 %
Ad1	protein:vir:99447	BJ1	84 %
Ne1	protein:vir:99454 protein:vir:99101 protein:vir:8669	BJ1 Qyrzula Rosebush	83 % 19 % 19 %
Tc1	protein:vir:99421	BJ1	75 %