Query lcl|NC_021537.1_cdsid_YP_008126588.1 [gene=HALG_00053] [protein=hypothetical protein] [protein_id=YP_008126588.1] [location=complement(38675..39202)] Match_columns 175 No_of_seqs 6 out of 8 Neff 2.1 Searched_HMMs 1612 Date Thu Nov 7 17:19:45 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_53 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_53_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:99421 Length: 175 100.0 5E-114 3E-117 641.7 14.6 175 1-175 1-175 (175) 2 protein:vir:10368 Length: 118 33.4 0.37 0.00023 22.9 2.6 64 112-175 1-72 (118) 3 protein:vir:93602 Length: 114 32.6 0.27 0.00017 23.7 1.7 63 113-175 1-73 (114) 4 protein:vir:97070 Length: 118 29.9 0.47 0.00029 22.4 2.5 64 112-175 1-72 (118) 5 protein:vir:195 Length: 115 # 26.6 0.38 0.00024 22.9 1.4 63 113-175 1-74 (115) 6 protein:vir:81066 Length: 118 24.6 0.85 0.00053 21.0 2.9 60 112-175 1-68 (118) 7 protein:vir:94259 Length: 722 4.9 14 0.0086 14.3 4.7 154 1-175 262-447 (722) 8 protein:vir:95155 Length: 151 4.5 15 0.0094 14.1 3.1 49 111-175 1-72 (151) 9 protein:vir:4348 Length: 121 # 1.7 35 0.022 12.1 1.6 67 109-175 1-78 (121) 10 protein:vir:1438 Length: 115 # 1.3 17 0.01 13.9 -1.2 62 114-175 1-69 (115) No 1 >protein:vir:99421 Length: 175 # NCBI annotation: hypothetical protein # Family: family:all:32736 # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919086;genbank:gi:119757044;genbank:GeneID:4606074 Probab=100.00 E-value=5e-114 Score=641.74 Aligned_cols=175 Identities=75% Similarity=1.224 Sum_probs=175.0 Q ss_pred CcchhHhHHHHhhhhhhhcccccCceeeecCCcceeecCCCCCcccCchhhchhhhhhhheeecccccCCCCCCCCCccc Q lcl|NC_021537. 1 MTTHEVEFLLDELSDVVDTQPADHPLRRVDRDNSRVFETGGTLDMSTPIHTRKADLEAANYVGVASQTTDPTPVGPNQRY 80 (175) Q Consensus 1 ~~t~Ev~~~Ld~L~~Vvd~~~~D~pl~RVnRd~S~vye~~~~ldm~~Pi~~rk~dlE~a~fvGa~~~dr~pTpvGte~d~ 80 (175) |||||||||||+||+|||+||+||||+|||||+|+||||+++||||+||||||++|||||||||+|++|+|||+|||||| T Consensus 1 ~~~hEv~~lLe~Lg~VvDaq~~DhPl~RVnRDtS~vYe~~~tLDmq~P~~tRk~~Leka~yVGvas~tt~ptP~Gp~~r~ 80 (175) T protein:vir:99 1 MTTHEVEYLLETLADVVDAQPADHPLRRVDRDTSRIYETGETLDMQSPLYTRKGDLEKANYVGVASQTTDPTPAGPNQRY 80 (175) T ss_pred CcchhHHHHHHHhhhhhhcCcCCCcceeeecCcceeecCCcccccccchhhhhhhhhhheeeeeeecccCCCCCCCCccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cceeeEEEEeeeeeccCCcccccCCCCCCCccchhHHHHHHHHHHHHHhcCCCCCCCcceeeeeEeecCcchhhhhhhhh Q lcl|NC_021537. 81 ENQTACSIRLEGLTRAGGEWGHIHPDGKDGAPAFSALFASVFDVVKAAMSYPDVGRPGVAYRDLTLTNVDDQASEYSDFY 160 (175) Q Consensus 81 ~le~~vsirlEGlt~~gg~~gHvdp~G~~g~p~fdal~r~v~rtv~~~~SYPdvg~Pgv~Yhdl~itn~d~~sae~~Dfy 160 (175) +||++|||||||||++||+||||||+||||+|+|+||||+|||+|+++||||+|||||++||||+|||+|+|+||||||| T Consensus 81 ~l~t~vsirlEglt~~gg~yGHv~p~gedG~P~FdalfR~v~dav~g~~SYPdv~~P~v~YrDLtiTn~D~q~se~~DFY 160 (175) T protein:vir:99 81 ELVATASIRLEALTRDGGTYGHVHPEGEDGAPTFDALFRAVFDAVRAEMSYPDVGRPGVAYRDLTITTIDEQLSDDKDFY 160 (175) T ss_pred ceeEEEEEEeeeeccccccccccCCCCCCCCcchhHHHHHHHHHHHHhhcCCCCCCCcceeeeeeeeccchhhhhhhcce Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred heeeeeeeeccccCC Q lcl|NC_021537. 161 RAEFDVLFRGYTDTP 175 (175) Q Consensus 161 r~efDv~~RGye~lP 175 (175) ||||||+|||||+|| T Consensus 161 R~eFD~~lRG~tdtP 175 (175) T protein:vir:99 161 RAEFDVQFRGYTDTP 175 (175) T ss_pred eeeeeeEeeccccCC Confidence 999999999999999 No 2 >protein:vir:10368 Length: 118 # NCBI annotation: conserved phage protein # Family: family:all:3244 # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858960;genbank:gi:32128425;genbank:GeneID:2648389 Probab=33.41 E-value=0.37 Score=22.94 Aligned_cols=64 Identities=14% Similarity=0.129 Sum_probs=44.6 Q ss_pred cchhHHHHHHHHHHHHHhcCCCCC------CCcceeeeeEeecCcch--hhhhhhhhheeeeeeeeccccCC Q lcl|NC_021537. 112 PAFSALFASVFDVVKAAMSYPDVG------RPGVAYRDLTLTNVDDQ--ASEYSDFYRAEFDVLFRGYTDTP 175 (175) Q Consensus 112 p~fdal~r~v~rtv~~~~SYPdvg------~Pgv~Yhdl~itn~d~~--sae~~Dfyr~efDv~~RGye~lP 175 (175) -.++.+++++...+.+.|=||++. .|++.|.-+-....... ....++-.|+|+||-=..|.+-= T Consensus 1 Ms~e~~l~a~L~~~~~~RVyp~~aP~~~~~~Pyiv~q~vsg~p~~~l~G~~~~~~~~rvQIdvyA~t~~~A~ 72 (118) T protein:vir:10 1 MSYGRVLKDLLDPVFSGRVYADIPPDSPPLDAYAIYQRVGGVPVYWQEGGMPEKVNARVQIQIWSRSKQEAY 72 (118) T ss_pred CchHHHHHHHHhhhcCCccccccCCCCCCcCCEEEEEecCCcccccccCCCCccceeEEEEEEeeCCHHHHH Confidence 568888888888888889998764 37888877665444433 35678889999999433222221 No 3 >protein:vir:93602 Length: 114 # NCBI annotation: putative structural component # Family: family:all:896 # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449300;genbank:gi:157166048;uniprot:Q6H9U1;genbank:GeneID:5580424 Probab=32.62 E-value=0.27 Score=23.70 Aligned_cols=63 Identities=16% Similarity=0.139 Sum_probs=40.5 Q ss_pred chhHHHHHHHHHHHHHhcCCCC----------CCCcceeeeeEeecCcchhhhhhhhhheeeeeeeeccccCC Q lcl|NC_021537. 113 AFSALFASVFDVVKAAMSYPDV----------GRPGVAYRDLTLTNVDDQASEYSDFYRAEFDVLFRGYTDTP 175 (175) Q Consensus 113 ~fdal~r~v~rtv~~~~SYPdv----------g~Pgv~Yhdl~itn~d~~sae~~Dfyr~efDv~~RGye~lP 175 (175) -++..+..+-..+.+.|=||++ ..|++.|.-+.-...+...---.|-+|+++||-=+.+.+-= T Consensus 1 M~e~~i~~lL~~~~~gRvyp~~~P~~~~~~~~~~Pyiv~q~vsg~p~~~l~gp~~~~~~vQIDvyA~t~~~A~ 73 (114) T protein:vir:93 1 MTEADLYPHLAHLAGGQVYPYVVPLLDGRPSVALPWVVFSLISSVSADVMGGQAESSVSVQIDVYAGTVTQAR 73 (114) T ss_pred CchHHHHHHHHhhcCcccccccCCcccCcCCccCceEEEEeccCcccccccCccccceEEEEEeeeCCHHHHH Confidence 4677777777777778888874 46899998775433332222345889999999443333222 No 4 >protein:vir:97070 Length: 118 # NCBI annotation: hypothetical protein # Family: family:all:3244 # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453569;genbank:gi:84662604;genbank:GeneID:5142485 Probab=29.91 E-value=0.47 Score=22.36 Aligned_cols=64 Identities=13% Similarity=0.122 Sum_probs=43.5 Q ss_pred cchhHHHHHHHHHHHHHhcCCCCC------CCcceeeeeEeecCcch--hhhhhhhhheeeeeeeeccccCC Q lcl|NC_021537. 112 PAFSALFASVFDVVKAAMSYPDVG------RPGVAYRDLTLTNVDDQ--ASEYSDFYRAEFDVLFRGYTDTP 175 (175) Q Consensus 112 p~fdal~r~v~rtv~~~~SYPdvg------~Pgv~Yhdl~itn~d~~--sae~~Dfyr~efDv~~RGye~lP 175 (175) -.++++++++-..+.+.|=||++. .|++.|.-+-....... .+.+++-.|+|+||-=..|.+-= T Consensus 1 M~~e~~l~a~L~~~~~~Rvyp~~aP~~~~~~Pyiv~q~vsg~p~~~ldG~~~~~~~~rvQIdvyA~t~~~A~ 72 (118) T protein:vir:97 1 MSYGRMLKDLLDPVFSGRVYADIPPDSPPLDAYAIYQRVGGVPVYWKEGGMPDKVNARVQVQIWSRSKQEAY 72 (118) T ss_pred CchHHHHHHHHhhhcCCccccccCCCCCCcCCEEEEEecCCcccccccCCCCCccceeEEEEEeeCCHHHHH Confidence 558888888878887889998764 48888887766544433 34678889999999433322221 No 5 >protein:vir:195 Length: 115 # NCBI annotation: Gp11 # Family: family:all:896 # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037705;genbank:gi:9634170;genbank:GeneID:1262540 Probab=26.64 E-value=0.38 Score=22.89 Aligned_cols=63 Identities=11% Similarity=0.126 Sum_probs=40.6 Q ss_pred chhHHHHHHHHHHHHHhcCCC-----------CCCCcceeeeeEeecCcchhhhhhhhhheeeeeeeeccccCC Q lcl|NC_021537. 113 AFSALFASVFDVVKAAMSYPD-----------VGRPGVAYRDLTLTNVDDQASEYSDFYRAEFDVLFRGYTDTP 175 (175) Q Consensus 113 ~fdal~r~v~rtv~~~~SYPd-----------vg~Pgv~Yhdl~itn~d~~sae~~Dfyr~efDv~~RGye~lP 175 (175) -.+.-+.++-..|.+.|=||. +-.|++.|.-+.-...+...---.|-+|+++||-=+.+.+-= T Consensus 1 M~e~~i~~lL~~l~~gRvyp~~aP~~~~~~~~~~~Pyiv~q~vsg~p~~~L~G~~~~~~~vQIDvyA~t~~~A~ 74 (115) T protein:vir:19 1 MNEDNIYALLSPLAEGRVYPYVAPLGSDGKPSVSPPWIIFSIVDDVSADVLCGQAESRVSVQVDVYSTSIAESR 74 (115) T ss_pred CchhHHHHHHhhhcCcccceeeccCCCCCCccccCCeEEEEeccCcccccccCCCccceEEEEEEeeCChHHHH Confidence 356666677777777888887 356888888775433333332345889999999544443332 No 6 >protein:vir:81066 Length: 118 # NCBI annotation: p13 # Family: family:all:3244 # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285683;genbank:gi:148727191;genbank:GeneID:5247111 Probab=24.62 E-value=0.85 Score=20.98 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=43.1 Q ss_pred cchhHHHHHHHHHHHHHhcCCCCC------CCcceeeeeEeecCcch--hhhhhhhhheeeeeeeeccccCC Q lcl|NC_021537. 112 PAFSALFASVFDVVKAAMSYPDVG------RPGVAYRDLTLTNVDDQ--ASEYSDFYRAEFDVLFRGYTDTP 175 (175) Q Consensus 112 p~fdal~r~v~rtv~~~~SYPdvg------~Pgv~Yhdl~itn~d~~--sae~~Dfyr~efDv~~RGye~lP 175 (175) -.++..++++...+...|=||++. .|++.|.-+-....... ....++-.|+|+|| |..++ T Consensus 1 Ms~e~~l~a~L~~~~~~Rvyp~~aP~~~~~~Pyiv~q~vsg~p~~~l~G~~~~~~~~rvQIdv----yA~t~ 68 (118) T protein:vir:81 1 MSYGRVLKDLLDPVFSGRVYADIPPDSPPLDAYAIYQRVGGVPVYWQEGGMPEKVNARVQIQI----WSRSK 68 (118) T ss_pred CchHHHHHHHHHhhcCCccccccCCCCCccCceEEEEecCCcccccccCCCCCccceeEEEEE----eeCCH Confidence 557888888888888888898763 37888877766544443 24677889999999 44444 No 7 >protein:vir:94259 Length: 722 # NCBI annotation: hypothetical protein # Family: family:all:12145 # MgeID: mge:1500 # MgeName: phiEL # Cross-refs: genbank:acc:YP_418039;genbank:gi:82700939;uniprot:Q2Z175;genbank:GeneID:5176710 Probab=4.88 E-value=14 Score=14.32 Aligned_cols=154 Identities=17% Similarity=0.207 Sum_probs=81.8 Q ss_pred CcchhHhHHHHhhhhhhh---cccccCceeeecCCcceeecCCCCCcccCchhhchhhhhhhheeecccccCCCCCCCCC Q lcl|NC_021537. 1 MTTHEVEFLLDELSDVVD---TQPADHPLRRVDRDNSRVFETGGTLDMSTPIHTRKADLEAANYVGVASQTTDPTPVGPN 77 (175) Q Consensus 1 ~~t~Ev~~~Ld~L~~Vvd---~~~~D~pl~RVnRd~S~vye~~~~ldm~~Pi~~rk~dlE~a~fvGa~~~dr~pTpvGte 77 (175) ..+.-++|.+|.|-+--. -+.--+|| ---=|.+|--++.+|.-.-|.-..+++|.-.||-+.-+.+.+--+-+- T Consensus 262 ~s~n~~~Y~~dv~~~sy~~~~~~s~~~Pl---~sPFsq~~vY~dnId~v~Qmiy~~E~~~N~~~v~v~~pg~~~~qid~~ 338 (722) T protein:vir:94 262 VSLNGVQYSLQTGFGSFTGRNKNAPGNPV---PAPFNDLVVYQDNIDTLCQMMYVVEQPENDTLVEVGVPGEYYKQMNPF 338 (722) T ss_pred ecccchhhhhhhhheeeccCcccCCCCcC---cCcccceEEEeccHHHHHHHHhhhhcccccccceeccCccccccccce Confidence 344567777777633222 11122333 112245555667777777777788888988888777766555433221 Q ss_pred --ccccceeeEEEEeeeee---------ccCCcccccCCCCCCCccchhHHHHHHHHHHHHHhcCCCCCCCcc------- Q lcl|NC_021537. 78 --QRYENQTACSIRLEGLT---------RAGGEWGHIHPDGKDGAPAFSALFASVFDVVKAAMSYPDVGRPGV------- 139 (175) Q Consensus 78 --~d~~le~~vsirlEGlt---------~~gg~~gHvdp~G~~g~p~fdal~r~v~rtv~~~~SYPdvg~Pgv------- 139 (175) -.|.=.---.|.++|.- +.||--|-.|-+|+ +| +--+=|++|.|-= T Consensus 339 T~~n~dG~PY~~Iq~~G~l~~~~~~~i~ssGGi~~~ldkDg~--v~--------------~Yv~~~t~n~~fg~ltd~e~ 402 (722) T protein:vir:94 339 TCTNHNGAPYYAITTSGVIKWDLSGAIKSSGGISPFLDKDGK--VP--------------DYVTKPTVNDPFGLLTNTER 402 (722) T ss_pred eeeecCCCcceeEEEeeeeecccceeeeccCCCccccCCCCC--cc--------------cceecCcCCccccccccchh Confidence 11222222356666643 56777777777764 22 1113344443321 Q ss_pred ---eeeeeEeec---Ccchh-----hhhhhhhheeeeeeeeccccCC Q lcl|NC_021537. 140 ---AYRDLTLTN---VDDQA-----SEYSDFYRAEFDVLFRGYTDTP 175 (175) Q Consensus 140 ---~Yhdl~itn---~d~~s-----ae~~Dfyr~efDv~~RGye~lP 175 (175) --.-.-||| +.+.. -+++|=||++|-++.- +.+| T Consensus 403 ~~~~~~~~~i~n~~~~~~~~~~vn~~~~~D~~rnq~~~~~D--~G~~ 447 (722) T protein:vir:94 403 PLTHLQAWEITNKLMVADLTSYVNGVEMKDTTRNRQSIFWD--IGYS 447 (722) T ss_pred hhhhhhhhhhhhhhhhhhhhhhccceeeeeeeeceeeeeee--cCCc Confidence 112233555 22222 2788888988887753 3455 No 8 >protein:vir:95155 Length: 151 # NCBI annotation: hypothetical protein ORF015 # Family: family:all:5248 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293422;genbank:gi:148912843;genbank:GeneID:5228230 Probab=4.47 E-value=15 Score=14.11 Aligned_cols=49 Identities=29% Similarity=0.392 Sum_probs=27.2 Q ss_pred ccchhHHHHHHHHHHHHHh-------------cCCCCCCCcceeee----------eEeecCcchhhhhhhhhheeeeee Q lcl|NC_021537. 111 APAFSALFASVFDVVKAAM-------------SYPDVGRPGVAYRD----------LTLTNVDDQASEYSDFYRAEFDVL 167 (175) Q Consensus 111 ~p~fdal~r~v~rtv~~~~-------------SYPdvg~Pgv~Yhd----------l~itn~d~~sae~~Dfyr~efDv~ 167 (175) .-+ |.+||++|...| -||++--||..+.| |+|-+.+. +.-. T Consensus 1 ~mt----f~q~R~~i~~~~~~~w~~~~~~~a~~~p~v~~~~~~~~d~P~g~~~WaRLti~h~~~------------~qA~ 64 (151) T protein:vir:95 1 MIE----FDQVNDEVNALFLATWNAGSAAIAGYVPEIRWQGVQYRDLPDGSKFWVRLSKQTVFE------------EQAT 64 (151) T ss_pred Ccc----HHHHHHHHHHHhhhhcccCchhhhccccccccCCCCCCCCCCCCCceEEEEeecCCC------------cccc Confidence 343 567777777766 46776666666665 23333332 2334 Q ss_pred eeccccCC Q lcl|NC_021537. 168 FRGYTDTP 175 (175) Q Consensus 168 ~RGye~lP 175 (175) |-+++.++ T Consensus 65 ls~~~eig 72 (151) T protein:vir:95 65 LSTCEGVP 72 (151) T ss_pred ccccccCC Confidence 55566664 No 9 >protein:vir:4348 Length: 121 # NCBI annotation: Orf15 # Family: family:all:896 # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061511;genbank:gi:9635607;genbank:GeneID:1262874 Probab=1.72 E-value=35 Score=12.09 Aligned_cols=67 Identities=10% Similarity=0.133 Sum_probs=33.6 Q ss_pred CCccchhHHHH-HHHHHHHHH---hcCC-CC-----CCCcceeeeeEeecCcchh-hhhhhhhheeeeeeeeccccCC Q lcl|NC_021537. 109 DGAPAFSALFA-SVFDVVKAA---MSYP-DV-----GRPGVAYRDLTLTNVDDQA-SEYSDFYRAEFDVLFRGYTDTP 175 (175) Q Consensus 109 ~g~p~fdal~r-~v~rtv~~~---~SYP-dv-----g~Pgv~Yhdl~itn~d~~s-ae~~Dfyr~efDv~~RGye~lP 175 (175) -=.|-|+.|-. ....+|++. |=|| .+ =.||+.|.-+--.-..... ..-+|-.|+|+||-=+-|.+-= T Consensus 1 m~~~i~~~l~~d~~v~allg~~~~Rvyp~~~aP~~~~~Pyiv~q~vsg~p~~~l~g~~~~~~~~vQIDvyA~t~~~A~ 78 (121) T protein:vir:43 1 MYPPIFKVCSSSPAVTAILGASPLRMYQFGLAPQLVVKPYATWQTISGSPENYLWGRPDADGFTIQVDIFSATAAEAR 78 (121) T ss_pred CChHHHHHHhhChhhhhhhcCCCceeeccCCCCCCCcCCeEEEEEecCcccceecCCCCcceeEEEEEeeeCCHHHHH Confidence 11222322222 234456665 6788 45 3478888755422222211 2356788999999544433322 No 10 >protein:vir:1438 Length: 115 # NCBI annotation: hypothetical protein # Family: family:all:2712 # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536367;genbank:gi:17975172;genbank:GeneID:929144 Probab=1.26 E-value=17 Score=13.87 Aligned_cols=62 Identities=15% Similarity=0.048 Sum_probs=35.0 Q ss_pred hhH-HHHHHHHHHHHHhcCCCC-----CCCcceeeeeEeecCcchh-hhhhhhhheeeeeeeeccccCC Q lcl|NC_021537. 114 FSA-LFASVFDVVKAAMSYPDV-----GRPGVAYRDLTLTNVDDQA-SEYSDFYRAEFDVLFRGYTDTP 175 (175) Q Consensus 114 fda-l~r~v~rtv~~~~SYPdv-----g~Pgv~Yhdl~itn~d~~s-ae~~Dfyr~efDv~~RGye~lP 175 (175) ..+ +++++...+-..|-||.+ -.||+.|.-+.-+-...+. ..-.|-+|+|+||-=+.|.+-= T Consensus 1 ~~~~~i~~aL~~l~~~RVyp~~aP~~~~~Pyiv~q~vsg~p~~~L~G~~~~~~~~vQIDvyA~t~~~A~ 69 (115) T protein:vir:14 1 MSVIVIRDALQGIGGAKGYLGVAPAKAPAPYFVVTRVHGALDMALAGLTGGRSGSYQIDCYAPTFTDAD 69 (115) T ss_pred CeeEeeehhhccccccccccccCCCCCCCCEEEEEeecCcccccccCCCCCcceEEEEEEeeCCHHHHH Confidence 111 233444444466777754 4688988866555444443 2556789999999543333322 Done!