Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 23 lcl|Aclame:protein:vir:270|NCBI_annot:putative HHsearch (proba=100.00%)
Portal 20 lcl|Aclame:protein:vir:267|NCBI_annot:putative HHsearch (proba=100.00%)
TermL 21 lcl|Aclame:protein:vir:268|NCBI_annot:putative Blast (e-value=0)
MTP NOT FOUND
Sheath 29 lcl|Aclame:protein:vir:276|NCBI_annot:putative HHsearch (proba=100.00%)
Ad1 25 lcl|Aclame:protein:vir:272|NCBI_annot:putative HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 27 lcl|Aclame:protein:vir:274|NCBI_annot:putative HHsearch (proba=100.00%)
Tc1 26 lcl|Aclame:protein:vir:273|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:270
protein:vir:78777
protein:vir:1153
K139
phiO18P
phi CTX
100 %
48 %
32 %
Portal protein:vir:267
protein:vir:98853
protein:vir:78749
K139
F108
phiO18P
100 %
49 %
47 %
TermL protein:vir:268
protein:vir:78781
protein:vir:3744
K139
phiO18P
HP1
100 %
57 %
50 %
Sheath protein:vir:276
protein:vir:78782
protein:vir:3788
K139
phiO18P
HP2
100 %
43 %
41 %
Ad1 protein:vir:272
protein:vir:78780
protein:vir:3748
K139
phiO18P
HP1
100 %
44 %
37 %
Ne1 protein:vir:274
protein:vir:78755
protein:vir:98860
K139
phiO18P
F108
100 %
26 %
24 %
Tc1 protein:vir:273
protein:vir:78779
protein:vir:3786
K139
phiO18P
HP2
100 %
38 %
24 %