Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Fishburne | Genbank acc : NC_021302

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 4) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 77

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	4	lcl\|NC_021302.1_cdsid_YP_008051229.1	HHsearch (proba=100.00%)
Portal	3	lcl\|NC_021302.1_cdsid_YP_008051228.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_021302.1_cdsid_YP_008051227.1	Blast (e-value=1e-101)
MTP	14	lcl\|NC_021302.1_cdsid_YP_008051239.1	Blast (e-value=9e-37)
Sheath	NOT FOUND
Ad1	8	lcl\|NC_021302.1_cdsid_YP_008051233.1	HHsearch (proba=100.00%)
Hc1	9	lcl\|NC_021302.1_cdsid_YP_008051234.1	HHsearch (proba=100.00%)
Ne1	12	lcl\|NC_021302.1_cdsid_YP_008051237.1	HHsearch (proba=100.00%)
Tc1	13	lcl\|NC_021302.1_cdsid_YP_008051238.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Tc1<->Hc1	4	3
Ne1<->Hc1	3	2
Tc1<->Ad1	5	4
Ne1<->Ad1	4	3

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79548	cdtI	32 %
Portal	protein:vir:108215 protein:vir:78161 protein:vir:95254	Giles Min1 Felix 01	43 % 40 % 22 %
TermL	protein:vir:108214 protein:vir:80678 protein:vir:99071	Giles PA6 Wildcat	41 % 24 % 23 %
MTP	protein:vir:101656 protein:vir:7861 protein:vir:8436	244 CJW1 Omega	30 % 30 % 29 %
Ad1	protein:vir:108221 protein:vir:9761 protein:vir:9576	Giles 315.3 SM1	28 % 23 % 23 %
Hc1	protein:vir:108230 protein:vir:8328 protein:vir:8105	Giles Corndog Che9c	37 % 27 % 18 %
Ne1	protein:vir:8432 protein:vir:8106 protein:vir:8330	Omega Che9c Corndog	34 % 30 % 29 %
Tc1	protein:vir:8331 protein:vir:102609 protein:vir:105826	Corndog Llij PMC	33 % 30 % 30 %