Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Lika | Genbank acc : NC_021298

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 75

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	10	lcl\|NC_021298.1_cdsid_YP_008050867.1	HHsearch (proba=100.00%)
Portal	7	lcl\|NC_021298.1_cdsid_YP_008050864.1	HHsearch (proba=100.00%)
TermL	6	lcl\|NC_021298.1_cdsid_YP_008050863.1	Blast (e-value=1e-116)
MTP	15	lcl\|NC_021298.1_cdsid_YP_008050872.1	Blast (e-value=2e-21)
Sheath	NOT FOUND
Ad1	11	lcl\|NC_021298.1_cdsid_YP_008050868.1	HHsearch (proba=100.00%)
Hc1	12	lcl\|NC_021298.1_cdsid_YP_008050869.1	HHsearch (proba=99.91%)
Ne1	13	lcl\|NC_021298.1_cdsid_YP_008050870.1	HHsearch (proba=100.00%)
Tc1	14	lcl\|NC_021298.1_cdsid_YP_008050871.1	HHsearch (proba=97.33%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:99075 protein:vir:96123 protein:vir:96833	Wildcat 37 EW	29 % 19 % 19 %
Portal	protein:vir:2500 protein:vir:99072 protein:vir:2427	TM4 Wildcat D29	31 % 26 % 23 %
TermL	protein:vir:4222 protein:vir:104081 protein:vir:7767	L5 Che12 Bxz2	42 % 40 % 40 %
MTP	protein:vir:7778 protein:vir:104093 protein:vir:4232	Bxz2 Che12 L5	36 % 34 % 33 %
Ad1	protein:vir:98481 protein:vir:78478 protein:vir:78254	VWB U2 Bethlehem	27 % 26 % 26 %
Hc1	protein:vir:2346 protein:vir:78288 protein:vir:7775	Bxb1 Bethlehem Bxz2	23 % 21 % 20 %
Ne1	protein:vir:78503 protein:vir:78298 protein:vir:2347	U2 Bethlehem Bxb1	31 % 31 % 31 %
Tc1	protein:vir:7777 protein:vir:1643 protein:vir:94768	Bxz2 r1t phi LC3	31 % 17 % 18 %