Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : vB_MapS_FF47 | Genbank acc : NC_021063

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 73

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	10	lcl\|NC_021063.1_cdsid_YP_007869934.1	HHsearch (proba=100.00%)
Portal	7	lcl\|NC_021063.1_cdsid_YP_007869931.1	HHsearch (proba=100.00%)
TermL	6	lcl\|NC_021063.1_cdsid_YP_007869930.1	Blast (e-value=1e-139)
MTP	16	lcl\|NC_021063.1_cdsid_YP_007869940.1	Blast (e-value=2e-37)
Sheath	NOT FOUND
Ad1	12	lcl\|NC_021063.1_cdsid_YP_007869936.1	HHsearch (proba=100.00%)
Hc1	13	lcl\|NC_021063.1_cdsid_YP_007869937.1	HHsearch (proba=100.00%)
Ne1	14	lcl\|NC_021063.1_cdsid_YP_007869938.1	HHsearch (proba=97.21%)
Tc1	15	lcl\|NC_021063.1_cdsid_YP_007869939.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:2504 protein:vir:78830 protein:vir:103955	TM4 80alpha phiNM	34 % 23 % 23 %
Portal	protein:vir:80680 protein:vir:2427 protein:vir:4223	PA6 D29 L5	36 % 30 % 29 %
TermL	protein:vir:98470 protein:vir:78494 protein:vir:104081	VWB U2 Che12	48 % 32 % 32 %
MTP	protein:vir:99926 protein:vir:2509 protein:vir:9765	Halo TM4 315.3	37 % 37 % 34 %
Ad1	protein:vir:99922 protein:vir:80668 protein:vir:8189	Halo PA6 Che9d	28 % 28 % 24 %
Hc1	protein:vir:8190 protein:vir:2506 protein:vir:102607	Che9d TM4 Llij	37 % 28 % 26 %
Ne1	protein:vir:9578 protein:vir:9763 protein:vir:94763	SM1 315.3 phi LC3	21 % 19 % 19 %
Tc1	protein:vir:99925 protein:vir:2508 protein:vir:98426	Halo TM4 VWB	26 % 25 % 24 %