Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PWH3a-P1 | Genbank acc : NC_020863

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 8) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 209

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	83	lcl\|NC_020863.1_cdsid_YP_007675943.1	HHsearch (proba=100.00%)
Portal	161	lcl\|NC_020863.1_cdsid_YP_007676021.1	HHsearch (proba=100.00%)
TermL	160	lcl\|NC_020863.1_cdsid_YP_007676020.1	Blast (e-value=1e-74)
MTP	NOT FOUND
Sheath	192	lcl\|NC_020863.1_cdsid_YP_007676052.1	HHsearch (proba=100.00%)
Ad1	169	lcl\|NC_020863.1_cdsid_YP_007676029.1	HHsearch (proba=87.10%)
Hc1	190	lcl\|NC_020863.1_cdsid_YP_007676050.1	HHsearch (proba=71.30%)
Ne1	187	lcl\|NC_020863.1_cdsid_YP_007676047.1	HHsearch (proba=100.00%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad1<->Hc1	21	2
Ne1<->Hc1	3	2
Ne1<->Ad1	18	4

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79548	cdtI	17 %
Portal	protein:vir:95254 protein:vir:108215 protein:vir:78161	Felix 01 Giles Min1	22 % 19 % 16 %
TermL	protein:vir:95253 protein:vir:94970 protein:vir:95130	Felix 01 Xp15 PA73	34 % 18 % 17 %
Sheath	protein:vir:5260 protein:vir:80052 protein:vir:95263	Aaphi23 B054 Felix 01	20 % 19 % 17 %
Ad1	protein:vir:104344 protein:vir:9928 protein:vir:107702	RTP 315.6 T1	16 % 16 % 11 %
Hc1	protein:vir:97237	M6	24 %
Ne1	protein:vir:99546 protein:vir:96105 protein:vir:101563	BcepF1 F8 Bcep43	22 % 22 % 21 %