Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : KBS-S-2A | Genbank acc : NC_020854

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 5) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 64

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	44	lcl\|NC_020854.1_cdsid_YP_007675017.1	HHsearch (proba=100.00%)
Portal	37	lcl\|NC_020854.1_cdsid_YP_007675010.1	HHsearch (proba=100.00%)
TermL	35	lcl\|NC_020854.1_cdsid_YP_007675008.1	Blast (e-value=1e-51)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	46	lcl\|NC_020854.1_cdsid_YP_007675019.1	HHsearch (proba=100.00%)
Hc1	54	lcl\|NC_020854.1_cdsid_YP_007675027.1	HHsearch (proba=100.00%)
Ne1	55	lcl\|NC_020854.1_cdsid_YP_007675028.1	HHsearch (proba=100.00%)
Tc1	56	lcl\|NC_020854.1_cdsid_YP_007675029.1	HHsearch (proba=99.96%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad1<->Hc1	8	2
Tc1<->Ad1	10	4
Ne1<->Ad1	9	3

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:5974 protein:vir:102944 protein:vir:1583	SPP1 EJ-1 phig1e	39 % 34 % 27 %
Portal	protein:vir:97265 protein:vir:95149 protein:vir:95014	M6 PA73 KS7	30 % 23 % 21 %
TermL	protein:vir:94991 protein:vir:78394 protein:vir:102238	KS7 SETP3 PBI1	31 % 30 % 21 %
Ad1	protein:vir:94955 protein:vir:95176 protein:vir:97267	Xp15 PA73 M6	26 % 25 % 23 %
Hc1	protein:vir:97237 protein:vir:78381 protein:vir:79639	M6 SETP3 TLS	29 % 30 % 21 %
Ne1	protein:vir:104347 protein:vir:96774 protein:vir:80425	RTP phiHSIC BcepGomr	21 % 21 % 20 %
Tc1	protein:vir:97211 protein:vir:104348 protein:vir:79637	M6 RTP TLS	26 % 25 % 25 %