Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : RC1 | Genbank acc : NC_020839

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 8) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 56

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	14	lcl\|NC_020839.1_cdsid_YP_007673214.1	HHsearch (proba=100.00%)
Portal	22	lcl\|NC_020839.1_cdsid_YP_007673222.1	HHsearch (proba=100.00%)
TermL	24	lcl\|NC_020839.1_cdsid_YP_007673224.1	Blast (e-value=1e-100)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	12	lcl\|NC_020839.1_cdsid_YP_007673212.1	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	20	lcl\|NC_020839.1_cdsid_YP_007673220.1	HHsearch (proba=100.00%)
Tc1	11	lcl\|NC_020839.1_cdsid_YP_007673211.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Ad1	8	3
Ne1<->Tc1	9	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79246 protein:vir:99228 protein:vir:1991	Phage MP22 DMS3 Mu	48 % 48 % 48 %
Portal	protein:vir:79233 protein:vir:99232 protein:vir:103860	Phage MP22 DMS3 D3112	31 % 30 % 28 %
TermL	protein:vir:107886 protein:vir:79096 protein:vir:1985	BcepMu phiE255 Mu	44 % 44 % 39 %
Ad1	protein:vir:1993 protein:vir:99848 protein:vir:103846	Mu B3 D3112	29 % 29 % 27 %
Ne1	protein:vir:2026 protein:vir:99833 protein:vir:6071	P2 B3 WPhi	27 % 26 % 26 %
Tc1	protein:vir:4515 protein:vir:488 protein:vir:4461	V P27 ST64B	25 % 25 % 24 %