Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 4 lcl|Aclame:protein:vir:6061|NCBI_annot:gpN|genbank:acc:NP_878202;genbank:gi:33438901;genbank:GeneID: HHsearch (proba=100.00%)
Portal 1 lcl|Aclame:protein:vir:6058|NCBI_annot:gpQ|genbank:acc:NP_878199;genbank:gi:33438898;genbank:GeneID: HHsearch (proba=100.00%)
TermL 2 lcl|Aclame:protein:vir:6059|NCBI_annot:gpP|genbank:acc:NP_878200;genbank:gi:33438899;genbank:GeneID: Blast (e-value=0)
MTP 23 lcl|Aclame:protein:vir:6080|NCBI_annot:gpFII|genbank:acc:NP_878221;genbank:gi:33438920;genbank:GeneI Blast (e-value=1e-100)
Sheath 22 lcl|Aclame:protein:vir:6079|NCBI_annot:gpFI|genbank:acc:NP_878220;genbank:gi:33438919;genbank:GeneID HHsearch (proba=100.00%)
Ad1 6 lcl|Aclame:protein:vir:6063|NCBI_annot:gpL|genbank:acc:NP_878204;genbank:gi:33438903;genbank:GeneID: HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 14 lcl|Aclame:protein:vir:6071|NCBI_annot:gpS|genbank:acc:NP_878212;genbank:gi:33438911;genbank:GeneID: HHsearch (proba=100.00%)
Tc1 13 lcl|Aclame:protein:vir:6070|NCBI_annot:gpR|genbank:acc:NP_878211;genbank:gi:33438910;genbank:GeneID: HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Tc1<->Ad1 7 4
Ne1<->Ad1 8 4


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:6061
protein:vir:5694
protein:vir:2016
WPhi
L-413C
P2
100 %
99 %
98 %
Portal protein:vir:6058
protein:vir:2013
protein:vir:5691
WPhi
P2
L-413C
100 %
99 %
99 %
TermL protein:vir:2014
protein:vir:6059
protein:vir:5692
P2
WPhi
L-413C
100 %
100 %
100 %
MTP protein:vir:2036
protein:vir:6080
protein:vir:5712
P2
WPhi
L-413C
100 %
100 %
96 %
Sheath protein:vir:6079
protein:vir:2035
protein:vir:5711
WPhi
P2
L-413C
100 %
98 %
95 %
Ad1 protein:vir:6063
protein:vir:2018
protein:vir:5696
WPhi
P2
L-413C
100 %
99 %
99 %
Ne1 protein:vir:6071
protein:vir:2026
protein:vir:5703
WPhi
P2
L-413C
100 %
99 %
99 %
Tc1 protein:vir:6070
protein:vir:5702
protein:vir:2025
WPhi
L-413C
P2
100 %
98 %
96 %