Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 4 lcl|Aclame:protein:vir:2016|NCBI_annot:gpN|genbank:acc:NP_046760;genbank:gi:9630331;genbank:GeneID:1 HHsearch (proba=100.00%)
Portal 1 lcl|Aclame:protein:vir:2013|NCBI_annot:gpQ|genbank:acc:NP_046757;genbank:gi:9630328;genbank:GeneID:1 HHsearch (proba=100.00%)
TermL 2 lcl|Aclame:protein:vir:2014|NCBI_annot:gpP|genbank:acc:NP_046758;genbank:gi:9630329;genbank:GeneID:1 Blast (e-value=0)
MTP 24 lcl|Aclame:protein:vir:2036|NCBI_annot:gpFII|genbank:acc:NP_046779;genbank:gi:9630350;genbank:GeneID Blast (e-value=1e-100)
Sheath 23 lcl|Aclame:protein:vir:2035|NCBI_annot:gpFI|genbank:acc:NP_046778;genbank:gi:9630349;genbank:GeneID: HHsearch (proba=100.00%)
Ad1 6 lcl|Aclame:protein:vir:2018|NCBI_annot:gpL|genbank:acc:NP_046762;genbank:gi:9630333;genbank:GeneID:1 HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 14 lcl|Aclame:protein:vir:2026|NCBI_annot:gpS|genbank:acc:NP_046769;genbank:gi:9630340;genbank:GeneID:1 HHsearch (proba=100.00%)
Tc1 13 lcl|Aclame:protein:vir:2025|NCBI_annot:gpR|genbank:acc:NP_046768;genbank:gi:9630339;genbank:GeneID:1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Tc1<->Ad1 7 4
Ne1<->Ad1 8 4


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:2016
protein:vir:5694
protein:vir:6061
P2
L-413C
WPhi
100 %
99 %
98 %
Portal protein:vir:2013
protein:vir:6058
protein:vir:5691
P2
WPhi
L-413C
100 %
99 %
99 %
TermL protein:vir:2014
protein:vir:6059
protein:vir:5692
P2
WPhi
L-413C
100 %
100 %
100 %
MTP protein:vir:2036
protein:vir:6080
protein:vir:5712
P2
WPhi
L-413C
100 %
100 %
96 %
Sheath protein:vir:2035
protein:vir:6079
protein:vir:5711
P2
WPhi
L-413C
100 %
98 %
95 %
Ad1 protein:vir:2018
protein:vir:6063
protein:vir:5696
P2
WPhi
L-413C
100 %
99 %
99 %
Ne1 protein:vir:2026
protein:vir:6071
protein:vir:5703
P2
WPhi
L-413C
100 %
99 %
98 %
Tc1 protein:vir:2025
protein:vir:5702
protein:vir:6070
P2
L-413C
WPhi
100 %
98 %
96 %