Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 16 lcl|NC_020479.1_cdsid_YP_007517560.1 HHsearch (proba=100.00%)
Portal 11 lcl|NC_020479.1_cdsid_YP_007517555.1 HHsearch (proba=100.00%)
TermL 9 lcl|NC_020479.1_cdsid_YP_007517553.1 Blast (e-value=1e-14)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 18 lcl|NC_020479.1_cdsid_YP_007517562.1 HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 19 lcl|NC_020479.1_cdsid_YP_007517563.1 HHsearch (proba=100.00%)
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:739
protein:vir:108211
protein:vir:3613
Tuc2009
Giles
TP901-1
20 %
19 %
18 %
Portal protein:vir:94666mu1/617 %
TermL protein:vir:3744
protein:vir:104262
protein:vir:78311
HP1
T5
B025
16 %
16 %
15 %
Ad1 protein:vir:79253
protein:vir:99222
protein:vir:79074
Phage MP22
DMS3
phiE255
21 %
21 %
20 %
Ne1 protein:vir:79225
protein:vir:107851
protein:vir:99196
Phage MP22
BcepMu
DMS3
27 %
26 %
26 %