Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Andromeda | Genbank acc : NC_020478

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 79

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	16	lcl\|NC_020478.1_cdsid_YP_007517481.1	HHsearch (proba=100.00%)
Portal	11	lcl\|NC_020478.1_cdsid_YP_007517476.1	HHsearch (proba=100.00%)
TermL	9	lcl\|NC_020478.1_cdsid_YP_007517474.1	Blast (e-value=2e-14)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	18	lcl\|NC_020478.1_cdsid_YP_007517483.1	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	19	lcl\|NC_020478.1_cdsid_YP_007517484.1	HHsearch (proba=100.00%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:739 protein:vir:108211 protein:vir:3613	Tuc2009 Giles TP901-1	20 % 19 % 18 %
Portal	protein:vir:94666	mu1/6	18 %
TermL	protein:vir:2014 protein:vir:9358 protein:vir:78311	P2 phi 12 B025	16 % 16 % 15 %
Ad1	protein:vir:79253 protein:vir:99222 protein:vir:79074	Phage MP22 DMS3 phiE255	21 % 21 % 20 %
Ne1	protein:vir:79225 protein:vir:107851 protein:vir:99833	Phage MP22 BcepMu B3	26 % 25 % 25 %