Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PaP1 | Genbank acc : NC_019913

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 157

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	51	lcl\|NC_019913.1_cdsid_YP_007236462.1	HHsearch (proba=100.00%)
Portal	47	lcl\|NC_019913.1_cdsid_YP_007236458.1	HHsearch (proba=100.00%)
TermL	46	lcl\|NC_019913.1_cdsid_YP_007236457.1	Blast (e-value=1e-83)
MTP	NOT FOUND
Sheath	56	lcl\|NC_019913.1_cdsid_YP_007236467.1	HHsearch (proba=100.00%)
Ad1	52	lcl\|NC_019913.1_cdsid_YP_007236463.1	HHsearch (proba=100.00%)
Hc1	54	lcl\|NC_019913.1_cdsid_YP_007236465.1	HHsearch (proba=100.00%)
Ne1	53	lcl\|NC_019913.1_cdsid_YP_007236464.1	HHsearch (proba=99.95%)
Tc1	55	lcl\|NC_019913.1_cdsid_YP_007236466.1	HHsearch (proba=97.03%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:95258 protein:vir:10324 protein:vir:98480	Felix 01 VHML VWB	29 % 27 % 15 %
Portal	protein:vir:95254 protein:vir:108215 protein:vir:78161	Felix 01 Giles Min1	39 % 21 % 19 %
TermL	protein:vir:95253 protein:vir:97250 protein:vir:94970	Felix 01 M6 Xp15	39 % 19 % 19 %
Sheath	protein:vir:95263 protein:vir:5260 protein:vir:80052	Felix 01 Aaphi23 B054	27 % 21 % 21 %
Ad1	protein:vir:95259	Felix 01	27 %
Hc1	protein:vir:95261 protein:vir:5258 protein:vir:107716	Felix 01 Aaphi23 BcepB1A	21 % 21 % 17 %
Ne1	protein:vir:94069 protein:vir:78607 protein:vir:106728	OP2 BcepNY3 Bcep1	31 % 26 % 26 %
Tc1	protein:vir:3637 protein:vir:101569 protein:vir:78612	Bcep781 Bcep43 BcepNY3	20 % 21 % 19 %