Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : mEp235 | Genbank acc : NC_019708

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 3) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 61

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	5	lcl\|NC_019708.1_cdsid_YP_007111581.1	HHsearch (proba=100.00%)
Portal	3	lcl\|NC_019708.1_cdsid_YP_007111579.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_019708.1_cdsid_YP_007111578.1	Blast (e-value=7e-97)
MTP	12	lcl\|NC_019708.1_cdsid_YP_007111588.1	Blast (e-value=1e-93)
Sheath	NOT FOUND
Ad1	7	lcl\|NC_019708.1_cdsid_YP_007111583.1	HHsearch (proba=100.00%)
Hc1	9	lcl\|NC_019708.1_cdsid_YP_007111585.1	HHsearch (proba=100.00%)
Ne1	10	lcl\|NC_019708.1_cdsid_YP_007111586.1	HHsearch (proba=100.00%)
Tc1	11	lcl\|NC_019708.1_cdsid_YP_007111587.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:4339 protein:vir:100135 protein:vir:97053	D3 phi1026b OP1	48 % 46 % 41 %
Portal	protein:vir:100150 protein:vir:4337 protein:vir:81072	phi1026b D3 Xop411	48 % 42 % 36 %
TermL	protein:vir:4335 protein:vir:4452 protein:vir:481	D3 ST64B P27	38 % 37 % 37 %
MTP	protein:vir:1893 protein:vir:4349 protein:vir:100241	HK022 D3 Bcep176	98 % 64 % 23 %
Ad1	protein:vir:100103 protein:vir:4512 protein:vir:10365	phi1026b V Xp10	41 % 37 % 33 %
Hc1	protein:vir:1890 protein:vir:4343 protein:vir:81177	HK022 D3 Geobacillus virus E2	99 % 40 % 35 %
Ne1	protein:vir:1891 protein:vir:4347 protein:vir:80362	HK022 D3 phi644-2	99 % 44 % 31 %
Tc1	protein:vir:1892 protein:vir:4348 protein:vir:93602	HK022 D3 phi 4795	100 % 58 % 24 %