Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 144 lcl|NC_019529.1_cdsid_YP_007007967.1 HHsearch (proba=100.00%)
Portal 141 lcl|NC_019529.1_cdsid_YP_007007964.1 HHsearch (proba=100.00%)
TermL 139 lcl|NC_019529.1_cdsid_YP_007007962.1 Blast (e-value=1e-147)
MTP 148 lcl|NC_019529.1_cdsid_YP_007007971.1 Blast (e-value=1e-10)
Sheath NOT FOUND
Ad1 145 lcl|NC_019529.1_cdsid_YP_007007968.1 HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 147 lcl|NC_019529.1_cdsid_YP_007007970.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:104256
protein:vir:81227
protein:vir:93616
T5
BFK20
phi 4795
57 %
18 %
17 %
Portal protein:vir:104259
protein:vir:81152
protein:vir:1380
T5
Geobacillus virus E2
phi3626
52 %
20 %
20 %
TermL protein:vir:104262
protein:vir:96495
protein:vir:9870
T5
2972
315.5
60 %
26 %
25 %
MTP protein:vir:105771
protein:vir:196
protein:vir:93600
ES18
HK97
phi 4795
24 %
22 %
17 %
Ad1 protein:vir:104255
protein:vir:100245
protein:vir:1887
T5
Bcep176
HK022
24 %
17 %
14 %
Tc1 protein:vir:104224
protein:vir:79571
protein:vir:3428
T5
cdtI
lambda
36 %
18 %
17 %