Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : pVp-1 | Genbank acc : NC_019529

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 4) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 157

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	144	lcl\|NC_019529.1_cdsid_YP_007007967.1	HHsearch (proba=100.00%)
Portal	141	lcl\|NC_019529.1_cdsid_YP_007007964.1	HHsearch (proba=100.00%)
TermL	139	lcl\|NC_019529.1_cdsid_YP_007007962.1	Blast (e-value=1e-147)
MTP	148	lcl\|NC_019529.1_cdsid_YP_007007971.1	Blast (e-value=1e-10)
Sheath	NOT FOUND
Ad1	145	lcl\|NC_019529.1_cdsid_YP_007007968.1	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	147	lcl\|NC_019529.1_cdsid_YP_007007970.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:104256 protein:vir:81227 protein:vir:93616	T5 BFK20 phi 4795	57 % 18 % 17 %
Portal	protein:vir:104259 protein:vir:81152 protein:vir:1380	T5 Geobacillus virus E2 phi3626	52 % 20 % 20 %
TermL	protein:vir:104262 protein:vir:96495 protein:vir:9870	T5 2972 315.5	60 % 26 % 25 %
MTP	protein:vir:105771 protein:vir:196 protein:vir:93600	ES18 HK97 phi 4795	24 % 22 % 17 %
Ad1	protein:vir:104255 protein:vir:100245 protein:vir:1887	T5 Bcep176 HK022	24 % 17 % 14 %
Tc1	protein:vir:104224 protein:vir:79571 protein:vir:3428	T5 cdtI lambda	36 % 18 % 17 %