Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : CcrRogue | Genbank acc : NC_019408

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 5) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 350

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	70	lcl\|NC_019408.1_cdsid_YP_006989099.1	HHsearch (proba=100.00%)
Portal	46	lcl\|NC_019408.1_cdsid_YP_006989075.1	HHsearch (proba=100.00%)
TermL	331	lcl\|NC_019408.1_cdsid_YP_006989360.1	Blast (e-value=2e-31)
MTP	91	lcl\|NC_019408.1_cdsid_YP_006989120.1	Blast (e-value=1e-06)
Sheath	NOT FOUND
Ad1	87	lcl\|NC_019408.1_cdsid_YP_006989116.1	HHsearch (proba=100.00%)
Hc1	88	lcl\|NC_019408.1_cdsid_YP_006989117.1	HHsearch (proba=99.08%)
Ne1	89	lcl\|NC_019408.1_cdsid_YP_006989118.1	HHsearch (proba=98.08%)
Tc1	90	lcl\|NC_019408.1_cdsid_YP_006989119.1	HHsearch (proba=96.98%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:97255 protein:vir:94933 protein:vir:80376	M6 Xp15 phi644-2	27 % 23 % 18 %
Portal	protein:vir:80453 protein:vir:94956 protein:vir:95149	BcepGomr Xp15 PA73	28 % 28 % 24 %
TermL	protein:vir:103223 protein:vir:5248 protein:vir:80106	JK06 Aaphi23 B054	27 % 26 % 22 %
MTP	protein:vir:78378 protein:vir:80398 protein:vir:97240	SETP3 BcepGomr M6	23 % 19 % 19 %
Ad1	protein:vir:80389 protein:vir:95176 protein:vir:97267	BcepGomr PA73 M6	30 % 26 % 24 %
Hc1	protein:vir:97237 protein:vir:80382 protein:vir:104346	M6 BcepGomr RTP	15 % 16 % 15 %
Ne1	protein:vir:94994 protein:vir:104347 protein:vir:94944	KS7 RTP Xp15	23 % 24 % 22 %
Tc1	protein:vir:94921 protein:vir:95155 protein:vir:107704	Xp15 PA73 T1	14 % 21 % 15 %