BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_019408.1_cdsid_YP_006989120.1 [gene=D869_gp260] [protein=putative major tail tube protein] [protein_id=YP_006989120.1] [location=57197..59029] (610 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|11176|lcl|protein:vir:78378 Length: 389 # NCBI annotation: pu... 46 1e-06 gi|12907|lcl|protein:vir:80398 Length: 431 # NCBI annotation: Bc... 33 0.012 gi|9605|lcl|protein:vir:97240 Length: 510 # NCBI annotation: hyp... 30 0.064 gi|5082|lcl|protein:vir:95133 Length: 511 # NCBI annotation: hyp... 25 2.6 gi|28182|lcl|protein:vir:108053 Length: 611 # NCBI annotation: g... 25 3.5 gi|25398|lcl|protein:vir:8929 Length: 717 # NCBI annotation: ORF... 24 4.2 >gi|11176|lcl|protein:vir:78378 Length: 389 # NCBI annotation: putative tail protein # Family: family:all:2098 # MgeID: mge:1851 # MgeName: SETP3 # Cross-refs: genbank:acc:YP_001110846;genbank:gi:134288607;genbank:G eneID:5179641 Length = 389 Score = 45.8 bits (107), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 35/72 (48%) Query: 25 GVTPATGVSRELRYTGSTVNAQKDTTLSEEIRADRMVSEIVEVAARTTGEINVEFSAGSH 84 GVTPA V + LR TG +D +S E+ S I + TGE +E SA S Sbjct: 22 GVTPANPVWQPLRNTGGIPAVTRDALVSNELDGSSETSSIRTGNNQVTGEYAIELSAESQ 81 Query: 85 DDLLEAFMYGAW 96 D+LL M +W Sbjct: 82 DELLAGAMSSSW 93 Score = 30.4 bits (67), Expect = 0.056, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 66/164 (40%), Gaps = 13/164 (7%) Query: 409 DQYYLADGMRIGTIGLNIAANSILTGSYGLQGRASTRQNETKLGASPYVALQTT---ATP 465 D Y + G+ + A N+++TGS+ G N+ L P + TT A P Sbjct: 202 DSYIITRGVEFPGFTIEQAVNAMVTGSFPFIGL-----NQEILQQPPSGSNFTTNFSARP 256 Query: 466 VANATVNVGKIAMNGEELSTAVQSIAINGTNNLRDQMAVGYKFPAGIGAGRMEISGSLVA 525 A+ V+V +G + + I N Q +G K A + R + SL Sbjct: 257 FASVDVSV----YDGSAPLKLIDTFTITNDNGASAQFELGNKSVAFVERDRASNTFSLAG 312 Query: 526 YFADGNLWDKFINHETVSVSFPLTDVLGNHYEFTIPAANFSTDT 569 D L +KF+N + VS L D FT+ A+ ++ T Sbjct: 313 KLYDLTLLNKFLNETEMEVSSVL-DGPDGAMSFTLKRASLTSAT 355 >gi|12907|lcl|protein:vir:80398 Length: 431 # NCBI annotation: BcepGomrgp12 # Family: family:all:7264 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210232;genbank:gi:146329924;genbank:Ge neID:5123507 Length = 431 Score = 32.7 bits (73), Expect = 0.012, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 49/119 (41%), Gaps = 6/119 (5%) Query: 489 SIAINGTNNLRDQMAVGYKFPAGIGAGRMEISGSLVAYFADGNLWDKFINHETVSVSFPL 548 SI IN NN+ A+G AG E+ GS+ AYFAD N+ V++ F + Sbjct: 311 SIVIN--NNISPNKAIGVLGAMDTTAGNFEVGGSVTAYFADVASVAAVKNNADVTLDFSV 368 Query: 549 TDVLGNHYEFTIPAANFSTDTVNPAGGNQDIMENLEYTAKRDPV--TDCQFQIDRYSSI 605 G F IP + NQ IM L+ TA + T F D+ SI Sbjct: 369 VK-KGKGIVFDIPLLTLGNGRLQVV-QNQAIMIPLDTTAAKGQFGYTLGTFWFDKLPSI 425 >gi|9605|lcl|protein:vir:97240 Length: 510 # NCBI annotation: hypothetical protein ORF027 # Family: family:all:7264 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294535;genbank:gi:149408256;genbank:Ge neID:5237105 Length = 510 Score = 30.4 bits (67), Expect = 0.064, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 4/78 (5%) Query: 113 SDTDTLYVKGKDVTPYFFAGRRVRTQGFINVANNGYWQIATITFNAGANRTEINMSASTA 172 S T L G V + F G F N ANNG+ ++ + A E + +A T Sbjct: 204 SGTKDLTTLGLVVGEWVFIGGDAAATKFTNAANNGFARVRAV----AATYIEFDKTAGTM 259 Query: 173 VAERGTAYSAMYDANDVI 190 VAE GTA + +VI Sbjct: 260 VAETGTAKTIQLFYGNVI 277 Score = 28.1 bits (61), Expect = 0.32, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 26/53 (49%) Query: 496 NNLRDQMAVGYKFPAGIGAGRMEISGSLVAYFADGNLWDKFINHETVSVSFPL 548 NN+ AV + AG ++SG++ AYFAD N+ V++ F L Sbjct: 398 NNVSPNKAVAVLGAFDVSAGTFQVSGNVTAYFADIAAVQAVRNNSDVTLDFAL 450 Score = 25.0 bits (53), Expect = 2.6, Method: Compositional matrix adjust. Identities = 35/153 (22%), Positives = 55/153 (35%), Gaps = 7/153 (4%) Query: 8 DSNRARMRYIKENNVIWGVTPATGVSRELRYTG-STVNAQKDTTLSEEIRADRMVSEIVE 66 DSN +RY +E+ + P + V L G + Q T I R + V Sbjct: 6 DSNVTGLRYAEEDTI--KNLPVSPVWYPLEPNGYNDFGGQLTTVARNPINPSRQRKKGVT 63 Query: 67 VAARTTGEINVEFSAGSHDDLLEAFMYGAWTRPMTFDSVQGVSLEWSD---TDTLYVKGK 123 +G + + + LL+ F + + G ++ +S T Y G Sbjct: 64 TDLDASGGFGQDLTQNNLTRLLQGFFFADIREKASNIPTNGTAVPFSGVTGTSKTYTLGS 123 Query: 124 -DVTPYFFAGRRVRTQGFINVANNGYWQIATIT 155 V F AG GF +NNG +A+ T Sbjct: 124 GTVGSQFLAGDLALASGFGQASNNGLKNVASST 156 >gi|5082|lcl|protein:vir:95133 Length: 511 # NCBI annotation: hypothetical protein ORF016 # Family: family:all:7264 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293423;genbank:gi:148912844;genbank:Ge neID:5228208 Length = 511 Score = 25.0 bits (53), Expect = 2.6, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Query: 489 SIAINGTNNLRDQMAVGYKFPAGIGAGRMEISGSLVAYF 527 +++IN NN+ AVG AG E+ GS+ AYF Sbjct: 393 NVSIN--NNVTPNKAVGVLGAFDTSAGNFEVGGSITAYF 429 Score = 23.5 bits (49), Expect = 8.0, Method: Compositional matrix adjust. Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 8/89 (8%) Query: 72 TGEINVEFSAGSHDDLLEAFMYG-----AWTRPMTFDSVQGVSLEWSDTDTLYVKGKDVT 126 +G N +F+ + +L+ F + T+P+ SV + D+ G V Sbjct: 72 SGGFNADFTKTNLARILQGFFFADARELPSTQPLNGASVALTGVTAIDSTYAAASGLGV- 130 Query: 127 PYFFAGRRVRTQGFINVANNGYWQIATIT 155 F A V GF N ANNG + + T Sbjct: 131 --FGADMLVYATGFANAANNGLKTVVSAT 157 >gi|28182|lcl|protein:vir:108053 Length: 611 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595293;genbank:gi:161622599;genbank:Ge neID:5783772 Length = 611 Score = 24.6 bits (52), Expect = 3.5, Method: Compositional matrix adjust. Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 20/99 (20%) Query: 16 YIKENNVIWGVTPATGVSRELRYTGSTVNAQKD--------------TTLSEEIRADRMV 61 YI+ N+ GV+ A + +L Y ++ +D +TL + I D++ Sbjct: 456 YIELNST--GVSVAKSLYMDLEYENVICDSMQDLGMKQTRRTKPVGCSTLKDLIEKDKLK 513 Query: 62 ----SEIVEVAARTTGEINVEFSAGSHDDLLEAFMYGAW 96 I+E + +++ G HDDL+ + + AW Sbjct: 514 LNHKQTIMEFRTFSQNKLSWAAEDGFHDDLVMSLVIFAW 552 >gi|25398|lcl|protein:vir:8929 Length: 717 # NCBI annotation: ORF025 # Family: family:all:1546 # MgeID: mge:163 # MgeName: phiKZ # Cross-refs: genbank:acc:NP_803591;genbank:gi:29134961;genbank:GeneID :1258246 Length = 717 Score = 24.3 bits (51), Expect = 4.2, Method: Compositional matrix adjust. Identities = 9/31 (29%), Positives = 17/31 (54%) Query: 66 EVAARTTGEINVEFSAGSHDDLLEAFMYGAW 96 E+ A T ++ + G+HDDL+ + + W Sbjct: 575 ELLALTIRNGRIDHAKGNHDDLVVSLLLAHW 605 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.315 0.130 0.365 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 251,345 Number of Sequences: 514 Number of extensions: 11196 Number of successful extensions: 48 Number of sequences better than 100.0: 16 Number of HSP's better than 100.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 24 length of query: 610 length of database: 206,069 effective HSP length: 77 effective length of query: 533 effective length of database: 166,491 effective search space: 88739703 effective search space used: 88739703 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 40 (20.0 bits)