Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiHau3 | Genbank acc : NC_018836

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 72

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	9	lcl\|NC_018836.1_cdsid_YP_006906189.1	HHsearch (proba=100.00%)
Portal	6	lcl\|NC_018836.1_cdsid_YP_006906186.1	HHsearch (proba=100.00%)
TermL	NOT FOUND
MTP	14	lcl\|NC_018836.1_cdsid_YP_006906194.1	Blast (e-value=2e-20)
Sheath	NOT FOUND
Ad1	10	lcl\|NC_018836.1_cdsid_YP_006906190.1	HHsearch (proba=100.00%)
Hc1	11	lcl\|NC_018836.1_cdsid_YP_006906191.1	HHsearch (proba=99.90%)
Ne1	12	lcl\|NC_018836.1_cdsid_YP_006906192.1	HHsearch (proba=100.00%)
Tc1	13	lcl\|NC_018836.1_cdsid_YP_006906193.1	HHsearch (proba=97.16%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:99075 protein:vir:97433 protein:vir:94494	Wildcat 92 88	29 % 21 % 21 %
Portal	protein:vir:2500 protein:vir:99072 protein:vir:4223	TM4 Wildcat L5	31 % 25 % 22 %
MTP	protein:vir:7778 protein:vir:104093 protein:vir:4232	Bxz2 Che12 L5	34 % 32 % 32 %
Ad1	protein:vir:98481 protein:vir:78478 protein:vir:78254	VWB U2 Bethlehem	25 % 24 % 24 %
Hc1	protein:vir:2346 protein:vir:78288 protein:vir:2434	Bxb1 Bethlehem D29	24 % 22 % 18 %
Ne1	protein:vir:78503 protein:vir:78298 protein:vir:2347	U2 Bethlehem Bxb1	31 % 31 % 31 %
Tc1	protein:vir:9764 protein:vir:1643 protein:vir:94768	315.3 r1t phi LC3	20 % 19 % 20 %