Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 7 lcl|NC_018279.1_cdsid_YP_006560813.1 HHsearch (proba=100.00%)
Portal 3 lcl|NC_018279.1_cdsid_YP_006560809.1 HHsearch (proba=100.00%)
TermL 2 lcl|NC_018279.1_cdsid_YP_006560808.1 Blast (e-value=1e-153)
MTP 14 lcl|NC_018279.1_cdsid_YP_006560820.1 Blast (e-value=1e-134)
Sheath NOT FOUND
Ad1 9 lcl|NC_018279.1_cdsid_YP_006560815.1 HHsearch (proba=100.00%)
Hc1 11 lcl|NC_018279.1_cdsid_YP_006560817.1 HHsearch (proba=100.00%)
Ne1 12 lcl|NC_018279.1_cdsid_YP_006560818.1 HHsearch (proba=100.00%)
Tc1 13 lcl|NC_018279.1_cdsid_YP_006560819.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:105778
protein:vir:107687
protein:vir:79642
ES18
T1
TLS
99 %
14 %
13 %
Portal protein:vir:105782
protein:vir:104338
protein:vir:99563
ES18
RTP
BcepF1
95 %
15 %
14 %
TermL protein:vir:105705
protein:vir:96782
protein:vir:96147
ES18
phiHSIC
37
71 %
41 %
27 %
MTP protein:vir:105771
protein:vir:93600
protein:vir:196
ES18
phi 4795
HK97
98 %
21 %
20 %
Ad1 protein:vir:105776
protein:vir:104344
protein:vir:5256
ES18
RTP
Aaphi23
97 %
19 %
16 %
Hc1 protein:vir:105774ES1894 %
Ne1 protein:vir:105773
protein:vir:106506
protein:vir:9930
ES18
phiAsp2
315.6
98 %
24 %
22 %
Tc1 protein:vir:105772
protein:vir:10368
protein:vir:81066
ES18
Xp10
Xop411
95 %
15 %
15 %