Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : vB_SosS_Oslo | Genbank acc : NC_018279

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 79

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	7	lcl\|NC_018279.1_cdsid_YP_006560813.1	HHsearch (proba=100.00%)
Portal	3	lcl\|NC_018279.1_cdsid_YP_006560809.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_018279.1_cdsid_YP_006560808.1	Blast (e-value=1e-153)
MTP	14	lcl\|NC_018279.1_cdsid_YP_006560820.1	Blast (e-value=1e-134)
Sheath	NOT FOUND
Ad1	9	lcl\|NC_018279.1_cdsid_YP_006560815.1	HHsearch (proba=100.00%)
Hc1	11	lcl\|NC_018279.1_cdsid_YP_006560817.1	HHsearch (proba=100.00%)
Ne1	12	lcl\|NC_018279.1_cdsid_YP_006560818.1	HHsearch (proba=100.00%)
Tc1	13	lcl\|NC_018279.1_cdsid_YP_006560819.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:105778 protein:vir:107687 protein:vir:79642	ES18 T1 TLS	99 % 14 % 13 %
Portal	protein:vir:105782 protein:vir:104338 protein:vir:99563	ES18 RTP BcepF1	95 % 15 % 14 %
TermL	protein:vir:105705 protein:vir:96782 protein:vir:96147	ES18 phiHSIC 37	71 % 41 % 27 %
MTP	protein:vir:105771 protein:vir:93600 protein:vir:196	ES18 phi 4795 HK97	98 % 21 % 20 %
Ad1	protein:vir:105776 protein:vir:104344 protein:vir:5256	ES18 RTP Aaphi23	97 % 19 % 16 %
Hc1	protein:vir:105774	ES18	94 %
Ne1	protein:vir:105773 protein:vir:106506 protein:vir:9930	ES18 phiAsp2 315.6	98 % 24 % 22 %
Tc1	protein:vir:105772 protein:vir:10368 protein:vir:81066	ES18 Xp10 Xop411	95 % 15 % 15 %