Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 2 lcl|NC_018271.1_cdsid_YP_006560342.1 HHsearch (proba=99.86%)
Portal 6 lcl|NC_018271.1_cdsid_YP_006560346.1 HHsearch (proba=100.00%)
TermL 37 lcl|NC_018271.1_cdsid_YP_006560377.1 Blast (e-value=1e-42)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 42 lcl|NC_018271.1_cdsid_YP_006560382.1 HHsearch (proba=98.47%)
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.





Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:99424
protein:vir:1328
protein:vir:96762
BJ1
phi-C31
VP882
12 %
14 %
13 %
Portal protein:vir:100328
protein:vir:98853
protein:vir:79150
phi-MhaA1-PHL101
F108
RSA1
22 %
19 %
18 %
TermL protein:vir:94525
protein:vir:96782
protein:vir:95058
phiJL-1
phiHSIC
X2
30 %
28 %
28 %
Ne1 protein:vir:5978
protein:vir:94654
protein:vir:96829
SPP1
mu1/6
EW
18 %
19 %
18 %