Virfam_CNT_anal:NC_018271

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : P12024S | Genbank acc : NC_018271

Category to which the Query Phage was assigned :

The phage most likely belong to the Siphoviridae class
However, some subunits are missing to confidently assign it to one of the 4 canonical Types characterized in Lopes et al (2014)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 59

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	2	lcl\|NC_018271.1_cdsid_YP_006560342.1	HHsearch (proba=99.86%)
Portal	6	lcl\|NC_018271.1_cdsid_YP_006560346.1	HHsearch (proba=100.00%)
TermL	37	lcl\|NC_018271.1_cdsid_YP_006560377.1	Blast (e-value=1e-42)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	42	lcl\|NC_018271.1_cdsid_YP_006560382.1	HHsearch (proba=98.47%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:99424 protein:vir:1328 protein:vir:96762	BJ1 phi-C31 VP882	12 % 14 % 13 %
Portal	protein:vir:100328 protein:vir:98853 protein:vir:79150	phi-MhaA1-PHL101 F108 RSA1	22 % 19 % 18 %
TermL	protein:vir:94525 protein:vir:96782 protein:vir:95058	phiJL-1 phiHSIC X2	30 % 28 % 28 %
Ne1	protein:vir:5978 protein:vir:94654 protein:vir:96829	SPP1 mu1/6 EW	18 % 19 % 18 %