Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 6 lcl|NC_017974.1_cdsid_YP_006383021.1 HHsearch (proba=100.00%)
Portal 2 lcl|NC_017974.1_cdsid_YP_006383017.1 HHsearch (proba=100.00%)
TermL 1 lcl|NC_017974.1_cdsid_YP_006383016.1 Blast (e-value=7e-68)
MTP NOT FOUND
Sheath 16 lcl|NC_017974.1_cdsid_YP_006383031.1 HHsearch (proba=100.00%)
Ad1 12 lcl|NC_017974.1_cdsid_YP_006383027.1 HHsearch (proba=94.72%)
Hc1 14 lcl|NC_017974.1_cdsid_YP_006383029.1 HHsearch (proba=96.88%)
Ne1 13 lcl|NC_017974.1_cdsid_YP_006383028.1 HHsearch (proba=100.00%)
Tc1 15 lcl|NC_017974.1_cdsid_YP_006383030.1 HHsearch (proba=96.71%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:95258
protein:vir:10324
protein:vir:96490
Felix 01
VHML
2972
22 %
21 %
15 %
Portal protein:vir:95254
protein:vir:108215
protein:vir:78161
Felix 01
Giles
Min1
25 %
19 %
18 %
TermL protein:vir:95253
protein:vir:106551
protein:vir:94970
Felix 01
Lj965
Xp15
36 %
20 %
19 %
Sheath protein:vir:95263
protein:vir:80052
protein:vir:94073
Felix 01
B054
OP2
22 %
18 %
16 %
Ad1 protein:vir:95259
protein:vir:9928
Felix 01
315.6
22 %
18 %
Hc1 protein:vir:5258Aaphi2322 %
Ne1 protein:vir:78607
protein:vir:106728
protein:vir:101563
BcepNY3
Bcep1
Bcep43
28 %
28 %
27 %
Tc1 protein:vir:95262
protein:vir:80105
protein:vir:3637
Felix 01
B054
Bcep781
25 %
23 %
13 %