Virfam_CNT_anal:NC_017972

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Lu11 | Genbank acc : NC_017972

Category to which the Query Phage was assigned :

The queried phage was recognized as a Myoviridae
but could not be further assigned to any of the 4 canonical Types characterized in Lopes et al (2014)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 391

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	65	lcl\|NC_017972.1_cdsid_YP_006382595.1	HHsearch (proba=99.07%)
Portal	189	lcl\|NC_017972.1_cdsid_YP_006382719.1	HHsearch (proba=99.92%)
TermL	188	lcl\|NC_017972.1_cdsid_YP_006382718.1	Blast (e-value=3e-06)
MTP	60	lcl\|NC_017972.1_cdsid_YP_006382590.1	Blast (e-value=2e-08)
Sheath	82	lcl\|NC_017972.1_cdsid_YP_006382612.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:97148 protein:vir:9820 protein:vir:3033	85 315.4 PhiNIH1.1	14 % 12 % 12 %
Portal	protein:vir:99452	BJ1	24 %
TermL	protein:vir:98727 protein:vir:102747 protein:vir:7745	Ma-LMM01 YS40 Bxz1	20 % 17 % 16 %
MTP	protein:vir:98264 protein:vir:5664 protein:vir:106171	RB43 KVP40 Aeh1	25 % 23 % 23 %
Sheath	protein:vir:98263 protein:vir:103456 protein:vir:106427	RB43 RB32 Aeh1	24 % 23 % 23 %