Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Bxz1 | Genbank acc : NC_004687 | Aclame index mge :148

Category to which the Query Phage was assigned :

The queried phage was recognized as a Myoviridae
but could not be further assigned to any of the 4 canonical Types characterized in Lopes et al (2014)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 225

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	94	lcl\|Aclame:protein:vir:7626\|NCBI_annot:gp97\|genbank:acc:NP_818170;genbank:gi:29566605;genbank:GeneID	HHsearch (proba=98.89%)
Portal	86	lcl\|Aclame:protein:vir:7618\|NCBI_annot:gp89\|genbank:acc:NP_818162;genbank:gi:29566597;genbank:GeneID	HHsearch (proba=100.00%)
TermL	213	lcl\|Aclame:protein:vir:7745\|NCBI_annot:gp239\|genbank:acc:NP_818289;genbank:gi:29566722;genbank:GeneI	Blast (e-value=0)
MTP	NOT FOUND
Sheath	121	lcl\|Aclame:protein:vir:7653\|NCBI_annot:gp124\|genbank:acc:NP_818197;genbank:gi:29566631;genbank:GeneI	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	119	lcl\|Aclame:protein:vir:7651\|NCBI_annot:gp122\|genbank:acc:NP_818195;genbank:gi:29566629;genbank:GeneI	HHsearch (proba=96.04%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:96833 protein:vir:9820 protein:vir:3033	EW 315.4 PhiNIH1.1	18 % 17 % 17 %
Portal	protein:vir:105154 protein:vir:95542 protein:vir:79538	C-St F10 cdtI	15 % 16 % 16 %
TermL	protein:vir:7745 protein:vir:107279 protein:vir:98727	Bxz1 Catera Ma-LMM01	100 % 84 % 20 %
Sheath	protein:vir:107310 protein:vir:7653 protein:vir:100829	Catera Bxz1 LP65	100 % 100 % 17 %
Ne1	protein:vir:106041 protein:vir:97982 protein:vir:107545	Cooper Orion PG1	17 % 17 % 17 %