BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_017972.1_cdsid_YP_006382590.1 [gene=LU11_gp060] [protein=putative tail tube protein] [protein_id=YP_006382590.1] [location=complement(32531..33043)] (170 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|24598|lcl|protein:vir:98264 Length: 161 # NCBI annotation: gp... 49 2e-08 gi|26945|lcl|protein:vir:5664 Length: 166 # NCBI annotation: gp1... 48 6e-08 gi|22058|lcl|protein:vir:103457 Length: 163 # NCBI annotation: t... 41 7e-06 gi|28184|lcl|protein:vir:108048 Length: 163 # NCBI annotation: g... 41 7e-06 gi|27412|lcl|protein:vir:7207 Length: 163 # NCBI annotation: gp1... 41 8e-06 gi|21079|lcl|protein:vir:100597 Length: 163 # NCBI annotation: g... 40 1e-05 gi|22944|lcl|protein:vir:101805 Length: 162 # NCBI annotation: g... 39 2e-05 gi|23193|lcl|protein:vir:101188 Length: 162 # NCBI annotation: t... 39 2e-05 gi|20246|lcl|protein:vir:106918 Length: 204 # NCBI annotation: t... 37 1e-04 gi|27125|lcl|protein:vir:6595 Length: 164 # NCBI annotation: tai... 37 1e-04 gi|25350|lcl|protein:vir:80985 Length: 164 # NCBI annotation: gp... 37 1e-04 gi|24014|lcl|protein:vir:104771 Length: 195 # NCBI annotation: T... 36 3e-04 gi|27703|lcl|protein:vir:6895 Length: 163 # NCBI annotation: gp1... 34 0.001 gi|20806|lcl|protein:vir:106171 Length: 162 # NCBI annotation: g... 32 0.005 gi|23415|lcl|protein:vir:103176 Length: 202 # NCBI annotation: g... 26 0.30 gi|22265|lcl|protein:vir:104504 Length: 196 # NCBI annotation: g... 26 0.32 gi|16077|lcl|protein:vir:4155 Length: 468 # NCBI annotation: lar... 23 2.1 gi|3935|lcl|protein:vir:103868 Length: 551 # NCBI annotation: hy... 22 4.7 >gi|24598|lcl|protein:vir:98264 Length: 161 # NCBI annotation: gp19 tail tube monomer # Family: family:all:1107 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239197;genbank:gi:66391672;genbank:GeneID :3416366 Length = 161 Score = 49.3 bits (116), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 5/136 (3%) Query: 35 GAELRIKCLSASLPGASLNPVEVELFGHKLLFAGRKTFTH-SMNIAYHEVYDGRTYNQLK 93 G R KC +A++P A++ V V K+ AG +T+ ++ I + ++ R + L Sbjct: 28 GKNFRFKCKAATMPAATVEKVPVGYQNRKINVAGDRTYDDWTITIYNDDAHNTR--DALV 85 Query: 94 SWASVGRATATQ-TGGFHDDYMRTAEFTVFDQTGADAAKWNIHRMFPTEIGEYQFEGAGG 152 +W+++ Q +G +Y +TA ++ A+ IH +FPT +GE + Sbjct: 86 AWSNMMHGMGDQISGDIPANYKKTATVKQKNRNDEITAEHTIHGLFPTNVGEVTLDWDSN 145 Query: 153 QALRQ-DATFAYGYVE 167 + + TFA + E Sbjct: 146 NEISTFECTFALDWWE 161 >gi|26945|lcl|protein:vir:5664 Length: 166 # NCBI annotation: gp19 # Family: family:all:1107 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899603;genbank:gi:34419590;genbank:GeneID :2545785 Length = 166 Score = 48.1 bits (113), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 5/134 (3%) Query: 35 GAELRIKCLSASLPGASLNPVEVELFGHKLLFAGRKTFTH-SMNIAYHEVYDGRTYNQLK 93 G + +C ++S+P S+ VEV K AG +TF ++ + E +D R + Sbjct: 31 GQNFKFQCRASSMPPGSVEKVEVSYQNRKYNIAGDRTFDDWNVTVYNDETHDIR--KAIM 88 Query: 94 SWASVGRATATQTGG-FHDDYMRTAEFTVFDQTGADAAKWNIHRMFPTEIGEYQFEGAGG 152 +W + G D Y RT T D+ G ++ +FPT +GE + Sbjct: 89 AWQARAVGLGKDISGETPDQYKRTGTITQLDRNGDPTTSATVYGIFPTVVGEVALDWDSN 148 Query: 153 QALRQ-DATFAYGY 165 + + TF+ Y Sbjct: 149 NEIETFEVTFSLDY 162 >gi|22058|lcl|protein:vir:103457 Length: 163 # NCBI annotation: tail tube monomer # Family: family:all:1107 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803109;genbank:gi:116326389;genbank:GeneI D:4405486 Length = 163 Score = 41.2 bits (95), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 12/140 (8%) Query: 35 GAELRIKCLSASLPGASLNPVEVELFGHKLLFAGRKTFTH-SMNIAYHEVYDGRTYNQLK 93 G +C + +LP + + V K+ AG +TF ++ + E +D R + Sbjct: 29 GQNFTFQCKATALPAGIVEKIPVGFMNRKINVAGDRTFDDWTITVMNDEAHDAR--QKFV 86 Query: 94 SWASVGRATATQ-TGGFHDDYMRTAEFTVFDQTGADA----AKWNIHRMFPTEIGEYQFE 148 W S+ + TGG +Y ++A + Q DA + I ++PT +GE Q + Sbjct: 87 DWQSIAAGQGNEITGGKPAEYKKSA---IVRQYARDAKTVTKEVEIKGLWPTNVGELQLD 143 Query: 149 GAGGQALRQ-DATFAYGYVE 167 ++ + T A Y E Sbjct: 144 WDSNNEIQTFEVTLALDYWE 163 >gi|28184|lcl|protein:vir:108048 Length: 163 # NCBI annotation: gp19 tail tube protein # Family: family:all:1107 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595295;genbank:gi:161622601;genbank:Ge neID:5783767 Length = 163 Score = 41.2 bits (95), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 6/137 (4%) Query: 35 GAELRIKCLSASLPGASLNPVEVELFGHKLLFAGRKTFTH-SMNIAYHEVYDGRTYNQLK 93 G KC +A +P + V V K+ AG +TF ++ I + +D R + Sbjct: 29 GKNFSFKCKAAPMPAGIVEKVPVGYMNRKINVAGDRTFDDWTITIYNDDAHDTR--QAIV 86 Query: 94 SWASVGRATATQ-TGGFHDDYMRTAEFTVFDQTGADAAK-WNIHRMFPTEIGEYQFEGAG 151 W ++ + TG +Y + A F + G K I+ ++PT +GE Q + Sbjct: 87 DWQNLCHGMTNEITGAAPAEYKKQAVVRQFHRDGKTVTKEVTIYGLWPTNVGEVQMDWDS 146 Query: 152 GQALRQ-DATFAYGYVE 167 + ++TFA + E Sbjct: 147 NNEVETFESTFAIDWWE 163 >gi|27412|lcl|protein:vir:7207 Length: 163 # NCBI annotation: gp19 tail tube protein # Family: family:all:1107 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049781;genbank:gi:9632593;genbank:GeneID: 1258727 Length = 163 Score = 41.2 bits (95), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 12/140 (8%) Query: 35 GAELRIKCLSASLPGASLNPVEVELFGHKLLFAGRKTFTH-SMNIAYHEVYDGRTYNQLK 93 G +C + +LP + + V K+ AG +TF ++ + E +D R + Sbjct: 29 GQNFTFQCKATALPAGIVEKIPVGFMNRKINVAGDRTFDDWTVTVMNDEAHDAR--QKFV 86 Query: 94 SWASVGRATATQ-TGGFHDDYMRTAEFTVFDQTGADA----AKWNIHRMFPTEIGEYQFE 148 W S+ + TGG +Y ++A + Q DA + I ++PT +GE Q + Sbjct: 87 DWQSIAAGQGNEITGGKPAEYKKSA---IVRQYARDAKTVTKEIEIKGLWPTNVGELQLD 143 Query: 149 GAGGQALRQ-DATFAYGYVE 167 ++ + T A Y E Sbjct: 144 WDSNNEIQTFEVTLALDYWE 163 >gi|21079|lcl|protein:vir:100597 Length: 163 # NCBI annotation: gp19 tail tube monomer # Family: family:all:1107 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656381;genbank:gi:109290132;genbank:GeneI D:4156575 Length = 163 Score = 40.4 bits (93), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 2/135 (1%) Query: 35 GAELRIKCLSASLPGASLNPVEVELFGHKLLFAGRKTFTHSMNIAYHEVYDGRTYNQLKS 94 G + K + ++P A++ + V KL AG + F Y + QL Sbjct: 29 GQNFKFKAKAGTMPAATVEKIPVGYMNRKLNVAGDRIFDDWTITIYTDSAPITLDRQLSD 88 Query: 95 WASVGRATATQ-TGGFHDDYMRTAEFTVFDQTGADAAKWNIHRMFPTEIGEYQFEGAGGQ 153 W ++ + TG + Y + D+ G ++ I +FPT +GE + Sbjct: 89 WNAMTHGMGNEITGDIPEAYKKPGIVRQKDRNGNTTKEYTIVGLFPTNVGEVTLDWDDNN 148 Query: 154 ALRQ-DATFAYGYVE 167 + + TFA + E Sbjct: 149 TVSTFETTFALDWWE 163 >gi|22944|lcl|protein:vir:101805 Length: 162 # NCBI annotation: gp19 # Family: family:all:1107 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238882;genbank:gi:66391957;genbank:GeneID :3416632 Length = 162 Score = 39.3 bits (90), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 3/135 (2%) Query: 35 GAELRIKCLSASLPGASLNPVEVELFGHKLLFAGRKTFTHSMNIAYHEVYDGRTYNQLKS 94 G + KC + ++P A++ + V KL AG + + Y++ T + Sbjct: 29 GQNFKFKCKAGTMPAATVEKIPVGYMNRKLNIAGDRIYDDWTVTIYNDSAH-ITRQAIVD 87 Query: 95 WASVGRATA-TQTGGFHDDYMRTAEFTVFDQTGADAAKWNIHRMFPTEIGEYQFEGAGGQ 153 W ++ T TG + Y + D+ G ++ I +FPT +GE + Sbjct: 88 WNAMTHGMGNTITGDIPEAYKKPGVVRQKDRNGESTKEYAIIGLFPTNVGEVTLDWDDNN 147 Query: 154 ALRQ-DATFAYGYVE 167 + + TFA + E Sbjct: 148 TVSTFEVTFALDWWE 162 >gi|23193|lcl|protein:vir:101188 Length: 162 # NCBI annotation: tail tube protein # Family: family:all:1107 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932510;genbank:gi:37651636;genbank:GeneID :2610681 Length = 162 Score = 39.3 bits (90), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 3/135 (2%) Query: 35 GAELRIKCLSASLPGASLNPVEVELFGHKLLFAGRKTFTHSMNIAYHEVYDGRTYNQLKS 94 G + KC + ++P A++ + V KL AG + + Y++ T + Sbjct: 29 GQNFKFKCKAGTMPAATVEKIPVGYMNRKLNIAGDRIYDDWTVTIYNDSAH-ITRQAIVD 87 Query: 95 WASVGRATA-TQTGGFHDDYMRTAEFTVFDQTGADAAKWNIHRMFPTEIGEYQFEGAGGQ 153 W ++ T TG + Y + D+ G ++ I +FPT +GE + Sbjct: 88 WNAMTHGMGNTITGDIPEAYKKPGVVRQKDRNGESTKEYAIIGLFPTNVGEVTLDWDDNN 147 Query: 154 ALRQ-DATFAYGYVE 167 + + TFA + E Sbjct: 148 TVSTFEVTFALDWWE 162 >gi|20246|lcl|protein:vir:106918 Length: 204 # NCBI annotation: tail tube protein gp19 # Family: family:all:1107 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195137;genbank:gi:58532914;goa:Q5GQN5;un iprot:Q5GQN5;genbank:GeneID:3260390 Length = 204 Score = 37.4 bits (85), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 26/46 (56%) Query: 27 DIPGEFNDGAELRIKCLSASLPGASLNPVEVELFGHKLLFAGRKTF 72 ++PG D + + C SA+LP ++L +EV G + AG +TF Sbjct: 30 EVPGASGDADMINLLCKSAALPASNLGVIEVPFRGRTVKIAGDRTF 75 >gi|27125|lcl|protein:vir:6595 Length: 164 # NCBI annotation: tail tube protein # Family: family:all:1107 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891726;genbank:gi:33620609;genbank:GeneID :1725319 Length = 164 Score = 37.0 bits (84), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/139 (19%), Positives = 58/139 (41%), Gaps = 11/139 (7%) Query: 35 GAELRIKCLSASLPGASLNPVEVELFGHKLLFAGRKTFTH----SMNIAYHEVYDGRTYN 90 G ++ C +A++P A++ + + K+ AG + + N H++ D Sbjct: 31 GQNFKLMCKAATVPAATVEKIAIGYQNRKINIAGDRVYDDWTITVFNDDAHKIRDA---- 86 Query: 91 QLKSWASVGRATATQ-TGGFHDDYMRTAEFTVFDQTGADAAKWNIHRMFPTEIGEYQFEG 149 + +W+ T + TG Y + A ++ ++ ++ +FPT +GE + Sbjct: 87 -IVAWSDQTHGTGSAITGATPAQYKKQAIVRQLNRNTESTSEKTLYGIFPTNVGEVTLDW 145 Query: 150 AGGQALRQ-DATFAYGYVE 167 + + TFA +VE Sbjct: 146 EQNNEVETFEVTFAIDWVE 164 >gi|25350|lcl|protein:vir:80985 Length: 164 # NCBI annotation: gp19 tail tube protein # Family: family:all:1107 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469500;genbank:gi:157311457;genbank:Ge neID:5602118 Length = 164 Score = 37.0 bits (84), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/139 (19%), Positives = 58/139 (41%), Gaps = 11/139 (7%) Query: 35 GAELRIKCLSASLPGASLNPVEVELFGHKLLFAGRKTFTH----SMNIAYHEVYDGRTYN 90 G ++ C +A++P A++ + + K+ AG + + N H++ D Sbjct: 31 GQNFKLMCKAATVPAATVEKIAIGYQNRKINIAGDRVYDDWTITVFNDDAHKIRDA---- 86 Query: 91 QLKSWASVGRATATQ-TGGFHDDYMRTAEFTVFDQTGADAAKWNIHRMFPTEIGEYQFEG 149 + +W+ T + TG Y + A ++ ++ ++ +FPT +GE + Sbjct: 87 -IVAWSDQTHGTGSAITGATPAQYKKQAIVRQLNRNTESTSEKTLYGIFPTNVGEVTLDW 145 Query: 150 AGGQALRQ-DATFAYGYVE 167 + + TFA +VE Sbjct: 146 EQNNEVETFEVTFAIDWVE 164 >gi|24014|lcl|protein:vir:104771 Length: 195 # NCBI annotation: T4-like tail tube protein # Family: family:all:1107 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214362;genbank:gi:61806002;genbank:GeneID :3294291 Length = 195 Score = 35.8 bits (81), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 4/118 (3%) Query: 39 RIKCLSASLPGASLNPVEVELFGHKLLFAGRKTFTHSMNIAYHEVYDGRTYNQLKSWASV 98 R A+LP +++ +EV G L AG +TF S + D + + W++ Sbjct: 52 RFLVKGANLPASNVAQIEVPFRGRVLKIAGDRTF-DSWTVTVINDTDFAIRSAFERWSNT 110 Query: 99 GRATATQTGGFHD-DYMRTAEFTVFDQTGADAAKWNIHRMFPTEIG--EYQFEGAGGQ 153 + TG + DY A D+ G+ + + FPT++G E ++ G Q Sbjct: 111 INRLSDNTGLTNPADYQSDAYVYQLDRDGSTLRSYRFYDTFPTQVGPIELSYDAQGIQ 168 >gi|27703|lcl|protein:vir:6895 Length: 163 # NCBI annotation: gp19 tail tube protein # Family: family:all:1107 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861871;genbank:gi:32453662;genbank:GeneID :1494297 Length = 163 Score = 33.9 bits (76), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 11/120 (9%) Query: 35 GAELRIKCLSASLPGASLNPVEVELFGHKLLFAGRKTFTH----SMNIAYHEVYDGRTYN 90 G +C + +LP A + V V K+ AG +TF MN H + Sbjct: 29 GQNFSFQCRATALPAAIVEKVPVSYMNRKINVAGDRTFDDWTITVMNDDAHSI-----RQ 83 Query: 91 QLKSWASVGRATATQ-TGGFHDDYMRTAEFTVFDQTGADAAK-WNIHRMFPTEIGEYQFE 148 + W + + TGG +Y ++A F + K I ++PT +GE + Sbjct: 84 KFVDWQGIAAGQGNEITGGKPAEYKKSAIVRQFARDAKTVTKEVEIVGLWPTNVGEVSLD 143 >gi|20806|lcl|protein:vir:106171 Length: 162 # NCBI annotation: gp19 tail tube protein # Family: family:all:1107 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944107;genbank:gi:38640151;genbank:GeneID :2657917 Length = 162 Score = 31.6 bits (70), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 4/112 (3%) Query: 35 GAELRIKCLSASLPGASLNPVEVELFGHKLLFAGRKTFTHSMNIAYH-EVYDGRTYNQLK 93 G + + KC AS+P + PV V K+ AG +TF Y+ E ++ R Q Sbjct: 29 GKDFKFKCKGASMPPGVVEPVPVSYQNKKMKLAGDRTFEDWTITVYNDEAHNTR--QQFI 86 Query: 94 SWASVGRATATQT-GGFHDDYMRTAEFTVFDQTGADAAKWNIHRMFPTEIGE 144 W ++ +A G Y + A D+ G ++ ++ +PT I E Sbjct: 87 EWQNLAQALDRNILGEAPASYKKEATVRQLDRKGKQTRQYTVYGAWPTNIAE 138 >gi|23415|lcl|protein:vir:103176 Length: 202 # NCBI annotation: gp130 # Family: family:all:1107 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717797;genbank:gi:113200634;genbank:Gene ID:4239185 Length = 202 Score = 25.8 bits (55), Expect = 0.30, Method: Compositional matrix adjust. Identities = 12/29 (41%), Positives = 17/29 (58%) Query: 44 SASLPGASLNPVEVELFGHKLLFAGRKTF 72 +A+LP + + VEV G L AG +TF Sbjct: 51 AANLPSSQIGVVEVPFRGRVLKIAGDRTF 79 >gi|22265|lcl|protein:vir:104504 Length: 196 # NCBI annotation: gp19 # Family: family:all:1107 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214664;genbank:gi:61806305;genbank:GeneID :3294559 Length = 196 Score = 25.8 bits (55), Expect = 0.32, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Query: 39 RIKCLSASLPGASLNPVEVELFGHKLLFAGRKTFTH-SMNIAYHEVYDGRTYNQLKSWAS 97 + +A+LP + + +EV G L AG +TF ++ I + R+ +L WAS Sbjct: 45 KFTVRAANLPSSQIGVIEVPFRGRVLKIAGDRTFEPWTITIMNDSQFKLRSAMEL--WAS 102 Query: 98 VGRA 101 +A Sbjct: 103 SIQA 106 >gi|16077|lcl|protein:vir:4155 Length: 468 # NCBI annotation: large terminase subunit # Family: family:all:144 # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046964;genbank:gi:9630534;genbank:GeneID: 1261708 Length = 468 Score = 23.1 bits (48), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 15/71 (21%) Query: 9 AYSLLDPMLNDNFELLFTDIPGEFNDGAELRIKCLSASLPGASLNPVEVELFGHKLL--- 65 A+ L + + +F + E ND LR++ S PG GH+ + Sbjct: 172 AFDELTEFMETQYRFMFRSLRKEVNDHIPLRVRATSN--PGG---------IGHEWVKTR 220 Query: 66 -FAGRKTFTHS 75 G KTF S Sbjct: 221 FITGEKTFIPS 231 >gi|3935|lcl|protein:vir:103868 Length: 551 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938233;genbank:gi:38229138;genbank:GeneID :2648183 Length = 551 Score = 21.9 bits (45), Expect = 4.7, Method: Compositional matrix adjust. Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 96 ASVGRATATQTGGFHDDY 113 A VGR T +GGF D + Sbjct: 524 ALVGRQGTTSSGGFDDSF 541 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.320 0.136 0.411 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,224 Number of Sequences: 514 Number of extensions: 3651 Number of successful extensions: 27 Number of sequences better than 100.0: 21 Number of HSP's better than 100.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 21 length of query: 170 length of database: 206,069 effective HSP length: 66 effective length of query: 104 effective length of database: 172,145 effective search space: 17903080 effective search space used: 17903080 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 34 (17.7 bits)