Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Ma-LMM01 | Genbank acc : NC_008562 | Aclame index mge :1530

Category to which the Query Phage was assigned :

The queried phage was recognized as a Myoviridae
but could not be further assigned to any of the 4 canonical Types characterized in Lopes et al (2014)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 184

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	86	lcl\|Aclame:protein:vir:98819\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Portal	83	lcl\|Aclame:protein:vir:98816\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
TermL	118	lcl\|Aclame:protein:vir:98727\|NCBI_annot:terminase\|genbank:acc:YP_851132;genbank:gi:117530289;genbank	Blast (e-value=0)
MTP	NOT FOUND
Sheath	91	lcl\|Aclame:protein:vir:98824\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:98819 protein:vir:98480 protein:vir:79503	Ma-LMM01 VWB P74-26	100 % 15 % 14 %
Portal	protein:vir:98816 protein:vir:79511 protein:vir:99853	Ma-LMM01 P74-26 B3	100 % 17 % 17 %
TermL	protein:vir:98727 protein:vir:102747 protein:vir:7745	Ma-LMM01 YS40 Bxz1	100 % 20 % 20 %
Sheath	protein:vir:98824 protein:vir:101804 protein:vir:7206	Ma-LMM01 31 T4	100 % 19 % 18 %