Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiEa104 | Genbank acc : NC_015292

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 118

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	51	lcl\|NC_015292.1_cdsid_YP_004327026.1	HHsearch (proba=100.00%)
Portal	46	lcl\|NC_015292.1_cdsid_YP_004327021.1	HHsearch (proba=100.00%)
TermL	45	lcl\|NC_015292.1_cdsid_YP_004327020.1	Blast (e-value=0)
MTP	NOT FOUND
Sheath	56	lcl\|NC_015292.1_cdsid_YP_004327031.1	HHsearch (proba=100.00%)
Ad1	52	lcl\|NC_015292.1_cdsid_YP_004327027.1	HHsearch (proba=100.00%)
Hc1	54	lcl\|NC_015292.1_cdsid_YP_004327029.1	HHsearch (proba=100.00%)
Ne1	53	lcl\|NC_015292.1_cdsid_YP_004327028.1	HHsearch (proba=100.00%)
Tc1	55	lcl\|NC_015292.1_cdsid_YP_004327030.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:95258 protein:vir:10324 protein:vir:106590	Felix 01 VHML Lj965	65 % 25 % 17 %
Portal	protein:vir:95254 protein:vir:78161 protein:vir:108215	Felix 01 Min1 Giles	67 % 22 % 19 %
TermL	protein:vir:95253 protein:vir:97250 protein:vir:95130	Felix 01 M6 PA73	70 % 20 % 19 %
Sheath	protein:vir:95263 protein:vir:80052 protein:vir:94073	Felix 01 B054 OP2	44 % 19 % 18 %
Ad1	protein:vir:95259	Felix 01	57 %
Hc1	protein:vir:95261 protein:vir:5258 protein:vir:107716	Felix 01 Aaphi23 BcepB1A	54 % 17 % 21 %
Ne1	protein:vir:95260 protein:vir:96105 protein:vir:99546	Felix 01 F8 BcepF1	45 % 21 % 21 %
Tc1	protein:vir:95262	Felix 01	46 %