Query lcl|NC_015292.1_cdsid_YP_004327030.1 [gene=ErPhphiEa104_gp055] [protein=hypothetical protein] [protein_id=YP_004327030.1] [location=34734..35342] Match_columns 202 No_of_seqs 2 out of 6 Neff 1.4 Searched_HMMs 1612 Date Thu Nov 7 14:03:39 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_55 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_55_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:95262 Length: 199 100.0 8E-137 5E-140 766.9 19.8 198 2-201 1-199 (199) 2 protein:vir:80105 Length: 162 54.1 0.51 0.00032 22.2 8.2 157 1-182 1-162 (162) 3 protein:vir:5259 Length: 213 # 28.9 1.7 0.0011 19.3 8.1 158 1-202 52-213 (213) 4 protein:vir:3970 Length: 110 # 3.8 3.2 0.002 17.8 -1.4 79 101-202 1-94 (110) 5 protein:vir:3615 Length: 110 # 2.5 6.3 0.0039 16.2 -1.3 79 101-202 1-94 (110) 6 protein:vir:6889 Length: 308 # 2.2 19 0.011 13.6 1.0 70 104-202 1-74 (308) 7 protein:vir:7198 Length: 309 # 2.2 21 0.013 13.3 1.3 70 104-202 1-71 (309) 8 protein:vir:78349 Length: 127 2.2 31 0.019 12.4 6.1 124 1-171 1-127 (127) 9 protein:vir:3428 Length: 131 # 2.1 15 0.0095 14.1 0.3 51 141-202 1-54 (131) 10 protein:vir:103451 Length: 309 1.9 27 0.017 12.7 1.3 70 104-202 1-71 (309) No 1 >protein:vir:95262 Length: 199 # NCBI annotation: Phage hypothetical protein # Family: family:all:31737 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944895;genbank:gi:38707835;genbank:GeneID:2744048 Probab=100.00 E-value=7.5e-137 Score=766.86 Aligned_cols=198 Identities=46% Similarity=0.800 Sum_probs=194.6 Q ss_pred cccchHHHhhhHHHHHHHHHHHHhhhccCCCCcEEEecCCCCCccCCCCCCCceEEEEEecccCchhhheeeeeccCCcE Q lcl|NC_015292. 2 SLLNLEQIEDGVVKYAVETIGQLLAKDKNKRPFVIIENPSDNSNDKGLKPDMPFVSVRSIGVTTPYGFLLDVFVDEQGRT 81 (202) Q Consensus 2 sll~~~~~e~g~v~~~v~~ig~~la~dkn~rp~vi~~~psdnsndkglkpd~pfisv~~~~~~tpyg~~ld~fvde~~~~ 81 (202) --||+||||||+|||+||+||||||||||||||||||||||||||||||||||||||||||+|||||||||+|| ||||+ T Consensus 1 mql~~~~~e~g~v~~~v~~ig~~la~dkn~rp~vi~~~psdnsndkglkpd~pfitv~~~~~~tpyg~~ld~fv-e~~~~ 79 (199) T protein:vir:95 1 MQLETAELEKGLVRTLVDVIGHRLARDKNNRPNVIRAYPSDNSNDKGLKPDQPFITVYCQDAATPYGWVLDKFV-EDDVV 79 (199) T ss_pred CcccHHHHHhhHHHHHHHHHHHHhhhccCCCCcEEEecCCCCCccCCCCCCCceEEEEEecccCchhhhhhhhh-hcCce Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999 99999 Q ss_pred EEEeeeeeEEEEEeeCCcchhhHHHHHhhhhHHHHHHHHHhhcCceeEeecCCCCccccceeccCCCCCceeeeeeehhe Q lcl|NC_015292. 82 CYRIPFKVQIRVTATGKNSFSIISDFKQRLEISSLRARLTEYTGGAILVDSGQMPQNFDMLQTDYEPSTPLILELAVDSI 161 (202) Q Consensus 82 cyri~f~i~i~it~~gk~~~si~~~~kqrle~ss~r~~~~e~tg~~ilvdsg~~p~~~~~l~td~e~s~pli~~l~~~si 161 (202) ||||||||||+||+|||||||||+||||||||||+|+||+|||||||| |||||||||+|||||||||||||+||++||| T Consensus 80 cyri~f~i~v~it~~gk~~~si~~~~kqrle~ss~r~~~~e~tg~~vl-dtg~~p~~~~~l~td~e~s~plv~~l~~~sv 158 (199) T protein:vir:95 80 CYRIAFQIPVLITVNGKGAHSIMLELKQRLEMSSVRDLILEETGATVL-DTGAIPNDYTYLNTDFENSAPLVVTLVKNSV 158 (199) T ss_pred EEEeeeeeEEEEEeeCCcchhhHHHHHhhhhHHHHHHHHhhhcCceee-eccCCCcccchhcccCCCCCceeeeeeehhe Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999 Q ss_pred eeecccceeeeeeeccEEEecCC-CCceEEEEecccchhhc Q lcl|NC_015292. 162 LVDYDSGVIERVIADGVLHYGEG-DTQAVAIHLDEHTQDYR 201 (202) Q Consensus 162 l~d~~~~iiervi~dg~l~y~eg-~~~~~~ihldehtqdyr 201 (202) |+|||||||||||+||+|||||| |||+||||||....--. T Consensus 159 l~d~~~~iiervi~dg~l~y~egq~~~~~~ihldvdskgvk 199 (199) T protein:vir:95 159 LKDERGSIIERVIVDGELVYEEGQEPPEYTIHLDVDSKGVK 199 (199) T ss_pred eeecccceeeeeeeccEEEecCCCCCceEEEEEeccccCCC Confidence 99999999999999999999999 99999999998776666 No 2 >protein:vir:80105 Length: 162 # NCBI annotation: gp13 # Family: family:all:2729 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468717;genbank:gi:157325297;genbank:GeneID:5601796 Probab=54.11 E-value=0.51 Score=22.18 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=77.4 Q ss_pred CcccchHHHhhhHHHHHHHHHHHHhhhccCCCCcEEEecCCCCCccCCCCCCCceEEEEEecccCchhhheeeeeccCCc Q lcl|NC_015292. 1 MSLLNLEQIEDGVVKYAVETIGQLLAKDKNKRPFVIIENPSDNSNDKGLKPDMPFVSVRSIGVTTPYGFLLDVFVDEQGR 80 (202) Q Consensus 1 msll~~~~~e~g~v~~~v~~ig~~la~dkn~rp~vi~~~psdnsndkglkpd~pfisv~~~~~~tpyg~~ld~fvde~~~ 80 (202) |.-.+-+===+++|+|+.+-|-.+- +.+-..|++ -.|.+|+-||+| | .+++||.-.- -|...+ T Consensus 1 ~~~~~~~~~~~~lv~~ii~~i~~~~--------~gl~vI~~~---~~g~~p~yPF~T-Y--~v~~pyi~~~---~~~~~~ 63 (162) T protein:vir:80 1 MPNDTAGYDYGKLVKTLINAVNELS--------GGLQLIESS---SGGEQPEYPFCQ-Y--TITSPYIAIS---PDIVEG 63 (162) T ss_pred CCCccccccHHHHHHHHHHHHHhhh--------cceeEEEcc---CCCCCCCCCeEE-E--EEecCccccC---CcccCC Confidence 6555554445678888877663322 122233444 358899999998 2 3456775432 112122 Q ss_pred EEEEeeeeeEEEEEeeCCcc---hhhHHHHHhhhhHHHHHHHHHhhcCceeEeecCCCCccccceeccCCCCCc--eeee Q lcl|NC_015292. 81 TCYRIPFKVQIRVTATGKNS---FSIISDFKQRLEISSLRARLTEYTGGAILVDSGQMPQNFDMLQTDYEPSTP--LILE 155 (202) Q Consensus 81 ~cyri~f~i~i~it~~gk~~---~si~~~~kqrle~ss~r~~~~e~tg~~ilvdsg~~p~~~~~l~td~e~s~p--li~~ 155 (202) . +|.+-+.+|+--.++ .++..+++.-|.-.++|-.+.+..| -+.||+|.+-+.=.....+||-..- +++. T Consensus 64 e----~~~~~isi~~~S~~~~eAl~la~~l~~~f~~~~~~~~~~~~~g-Ivvvdv~~~~~R~~~~~~~yerR~GFD~~~R 138 (162) T protein:vir:80 64 E----QFEIVISLTWRALSGHQALNLANITNKYFRSQKGRFFMQENGG-IVVVSVQNSGLRDTFISIEYERSAGIDLRLR 138 (162) T ss_pred c----ceEEEEEEEEEeCCHHHHHHHHHHHHHHhhcCCceeeeeecCc-EEEEecCCCccceeEeeeeeeeeecceEEEE Confidence 2 455556666665554 3444444444444444444444444 4556999876654444555554443 4444 Q ss_pred eeehheeeecccceeeeeeeccEEEec Q lcl|NC_015292. 156 LAVDSILVDYDSGVIERVIADGVLHYG 182 (202) Q Consensus 156 l~~~sil~d~~~~iiervi~dg~l~y~ 182 (202) +..+ . +.+=-.||-+-.-+.-.=| T Consensus 139 v~r~-~--e~~~~tIe~i~~~~~~~g~ 162 (162) T protein:vir:80 139 VVDS-Y--SSEIQEIDNISFTNENLGG 162 (162) T ss_pred Eeec-c--ccccceeeeecccCcccCC Confidence 4331 1 1112234433111111101 No 3 >protein:vir:5259 Length: 213 # NCBI annotation: hypothetical protein # Family: family:all:4879 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852764;genbank:gi:31544039;uniprot:Q7Y5T6;genbank:GeneID:2753558 Probab=28.88 E-value=1.7 Score=19.31 Aligned_cols=158 Identities=16% Similarity=0.165 Sum_probs=84.5 Q ss_pred CcccchHHHhhhHHHHHHHHHHHHhhhccCCCCcEEEecCCCCCccCCCCCCCceEEEEEecccCchhhheeeeeccCCc Q lcl|NC_015292. 1 MSLLNLEQIEDGVVKYAVETIGQLLAKDKNKRPFVIIENPSDNSNDKGLKPDMPFVSVRSIGVTTPYGFLLDVFVDEQGR 80 (202) Q Consensus 1 msll~~~~~e~g~v~~~v~~ig~~la~dkn~rp~vi~~~psdnsndkglkpd~pfisv~~~~~~tpyg~~ld~fvde~~~ 80 (202) .|-|+..- +-++|-++|+--. -.||-++ .-.-|=-|||+|.-- ..+|-|-.=-.|-.++-+ T Consensus 52 vS~lD~~~--------LRq~ir~Ll~LPe---g~Vid~~-------~da~p~~pFITV~~l-~ss~lG~a~reFdg~rEv 112 (213) T protein:vir:52 52 ISGFDIVR--------LRKLIQQALQLPD---GVVIGGW-------LPENPLSAFITVDVL-MSSETGIARRDFDGKRER 112 (213) T ss_pred cccccHHH--------HHHHHHHHHhCCc---ceecCCc-------CCCCCCCCeEEEeec-ccchhhhhhhhccCchhh Confidence 33444332 3345666665321 1244322 112233499999865 467888765566556555 Q ss_pred EEEEeeeeeEEEEEeeCCcchhhHHHHHhhhhHHHHHHHHHhhcCceeEeecCCCCccccceeccCCCCCceeeeeeehh Q lcl|NC_015292. 81 TCYRIPFKVQIRVTATGKNSFSIISDFKQRLEISSLRARLTEYTGGAILVDSGQMPQNFDMLQTDYEPSTPLILELAVDS 160 (202) Q Consensus 81 ~cyri~f~i~i~it~~gk~~~si~~~~kqrle~ss~r~~~~e~tg~~ilvdsg~~p~~~~~l~td~e~s~pli~~l~~~s 160 (202) -+...+--|.+++-|||||-.+++++--|+-|---. .+.-.|+.++ ---++-|==.-.--+||.-+-+=+++.--- T Consensus 113 --it~S~et~vs~tafGtnAy~ll~kl~a~L~ss~al~-~LK~l~aGlV-r~S~v~nLsa~iggg~e~RArfdltfsH~H 188 (213) T protein:vir:52 113 --ITMSMQNTVSFSCFGTNAMAQCYKLKAILQSSVILQ-ALKTMNVGIV-SFSDVRNLTATIGSDYEERGQFDAVFSHHH 188 (213) T ss_pred --hhhhhccEEEEEEeChhHHHHHHHHHHHHhHHHHHH-HHHHhcccee-eeccccccceecCCCchhheeeeeeeeeee Confidence 556677789999999999999999998887554444 3445566654 333433222333456666666655554322 Q ss_pred eeeecccceeeeeeeccEEEecCCCCceEEEEeccc----chhhcC Q lcl|NC_015292. 161 ILVDYDSGVIERVIADGVLHYGEGDTQAVAIHLDEH----TQDYRE 202 (202) Q Consensus 161 il~d~~~~iiervi~dg~l~y~eg~~~~~~ihldeh----tqdyre 202 (202) ... .|-.-+-|.|.. ||..-| T Consensus 189 rVe---------------------t~l~~~~~v~~rt~hit~~~~~ 213 (213) T protein:vir:52 189 IVD---------------------TPLDPIKRVEQRTNHLTQQIGE 213 (213) T ss_pred eec---------------------cchHHHHHhhhhhhhHHHhhcC Confidence 111 000111122222 222222 No 4 >protein:vir:3970 Length: 110 # NCBI annotation: hypothetical protein # Family: family:all:372 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663678;genbank:gi:21716115;genbank:GeneID:951203 Probab=3.79 E-value=3.2 Score=17.79 Aligned_cols=79 Identities=22% Similarity=0.393 Sum_probs=41.1 Q ss_pred hhhHHHHHhhhhHHH----------HHHHHHhhcCceeEeecCCCCccccceeccCCCCCceeeeeeehheeeeccccee Q lcl|NC_015292. 101 FSIISDFKQRLEISS----------LRARLTEYTGGAILVDSGQMPQNFDMLQTDYEPSTPLILELAVDSILVDYDSGVI 170 (202) Q Consensus 101 ~si~~~~kqrle~ss----------~r~~~~e~tg~~ilvdsg~~p~~~~~l~td~e~s~pli~~l~~~sil~d~~~~ii 170 (202) .+|+.++|-||.++. ..++++.++|- +...+|..++++. +++++-- . T Consensus 1 M~iL~~vK~~lgi~~D~lL~~li~~a~~~i~~~l~~----~~~~iP~~l~~iv----------~evav~r---------y 57 (110) T protein:vir:39 1 MAITDDLKKLLGGSSDERLEVIEKRTRERLLLILSS----NIKEVPPELEYVV----------LDVSLKR---------F 57 (110) T ss_pred CchHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhCC----ChhhhhhHHHHHH----------HHHHHHH---------h Confidence 889999999999873 23344445442 2234777776643 3333221 1 Q ss_pred eeeeeccEEEecCC-CCceEE-EEeccc---chhhcC Q lcl|NC_015292. 171 ERVIADGVLHYGEG-DTQAVA-IHLDEH---TQDYRE 202 (202) Q Consensus 171 ervi~dg~l~y~eg-~~~~~~-ihldeh---tqdyre 202 (202) .|.=+.|.=.|.|| ....|. --+|+- -+.||+ T Consensus 58 NR~g~EG~~S~SeeG~S~sf~~~d~~~y~~~l~~y~~ 94 (110) T protein:vir:39 58 NRIGQEGMQSYSQEGLSMTFSESDFDEYADEIESWRK 94 (110) T ss_pred ccccccccceeecCCeeeeecccCcchhHHHHHHHhh Confidence 45556677777665 333331 111221 223443 No 5 >protein:vir:3615 Length: 110 # NCBI annotation: ORF38 # Family: family:all:372 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112701;genbank:gi:13786569;genbank:GeneID:921067 Probab=2.46 E-value=6.3 Score=16.21 Aligned_cols=79 Identities=23% Similarity=0.400 Sum_probs=41.8 Q ss_pred hhhHHHHHhhhhHHH----------HHHHHHhhcCceeEeecCCCCccccceeccCCCCCceeeeeeehheeeeccccee Q lcl|NC_015292. 101 FSIISDFKQRLEISS----------LRARLTEYTGGAILVDSGQMPQNFDMLQTDYEPSTPLILELAVDSILVDYDSGVI 170 (202) Q Consensus 101 ~si~~~~kqrle~ss----------~r~~~~e~tg~~ilvdsg~~p~~~~~l~td~e~s~pli~~l~~~sil~d~~~~ii 170 (202) ..|+.++|-+|.++. ..++|+.++|- |...+|..++++. +++++-- . T Consensus 1 M~~L~~vK~~lg~~~D~lL~~li~~a~~~i~~~~~~----~~~eiP~~l~~iv----------~evav~r---------y 57 (110) T protein:vir:36 1 MAITDDLKMLLGGSLDERLEVIEKRTRDRLLLILGS----DIKEVPPELEYVV----------LDVSLKR---------F 57 (110) T ss_pred ChhHHHHHhhcCCChhHHHHHHHHHHHHHHHHHhCC----ChhhhhhHHHHHH----------HHHHHHH---------h Confidence 889999999998853 34555556663 2335777776643 3333221 1 Q ss_pred eeeeeccEEEecCC-CCceEE-EEeccc---chhhcC Q lcl|NC_015292. 171 ERVIADGVLHYGEG-DTQAVA-IHLDEH---TQDYRE 202 (202) Q Consensus 171 ervi~dg~l~y~eg-~~~~~~-ihldeh---tqdyre 202 (202) .|.=+.|.=.|.|+ ....+. --+|+- -+.||+ T Consensus 58 NR~g~EG~~S~SeeG~S~sf~~~d~~~y~~~l~~y~~ 94 (110) T protein:vir:36 58 NRIGQEGMQSYSQEGLSMTFSESDFDEYADEIESWRK 94 (110) T ss_pred ccccccccceeecCCceeeecccCcchHHHHHHHHHh Confidence 34456677777665 333331 011111 223443 No 6 >protein:vir:6889 Length: 308 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861865;genbank:gi:32453656;genbank:GeneID:1494291 Probab=2.25 E-value=19 Score=13.62 Aligned_cols=70 Identities=19% Similarity=0.351 Sum_probs=32.2 Q ss_pred HHHHHhhhhHHHHHHHHHhhcCceeEeecCCCCccccceeccCCCCCceeeeeeehheeeecccceeeeeee-ccEEEec Q lcl|NC_015292. 104 ISDFKQRLEISSLRARLTEYTGGAILVDSGQMPQNFDMLQTDYEPSTPLILELAVDSILVDYDSGVIERVIA-DGVLHYG 182 (202) Q Consensus 104 ~~~~kqrle~ss~r~~~~e~tg~~ilvdsg~~p~~~~~l~td~e~s~pli~~l~~~sil~d~~~~iiervi~-dg~l~y~ 182 (202) |+.-+-+ .-+.|++.|++..|+.|+ . +++..+-| .-.|+|-+. =+|-||. T Consensus 1 m~~~~~~-s~~eLkdyiLRrLGAPvi-~----------------------InVtd~Qi-----~DcId~Alely~EyHyd 51 (308) T protein:vir:68 1 MSGYNAQ-NPKELKDVILRRLGAPIV-N----------------------VELTTDQI-----YDCISRALELYGEYHFD 51 (308) T ss_pred CCCCCCC-CHHHHHHHHHHhcCCceE-E----------------------EecCHHHH-----HHHHHHHHHHhhhhhcc Confidence 2211100 012578899999999998 1 22211111 112222221 1566775 Q ss_pred CCCCceEEEEecccch---hhcC Q lcl|NC_015292. 183 EGDTQAVAIHLDEHTQ---DYRE 202 (202) Q Consensus 183 eg~~~~~~ihldehtq---dyre 202 (202) -=+.--..+|++++.| .|.. T Consensus 52 G~~k~y~~~~i~~d~~~k~g~f~ 74 (308) T protein:vir:68 52 GLNKGFHVFFVDDEEKYRHGVFD 74 (308) T ss_pred ccccceEEEEeChhhhhccceee Confidence 3355555666755544 2221 No 7 >protein:vir:7198 Length: 309 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049772;genbank:gi:9632587;genbank:GeneID:1258809 Probab=2.23 E-value=21 Score=13.28 Aligned_cols=70 Identities=19% Similarity=0.379 Sum_probs=30.7 Q ss_pred HHHHHhhhhHHHHHHHHHhhcCceeEeecCCCCccccceeccCCCCCceeeeeeehheeeecccceeeeeee-ccEEEec Q lcl|NC_015292. 104 ISDFKQRLEISSLRARLTEYTGGAILVDSGQMPQNFDMLQTDYEPSTPLILELAVDSILVDYDSGVIERVIA-DGVLHYG 182 (202) Q Consensus 104 ~~~~kqrle~ss~r~~~~e~tg~~ilvdsg~~p~~~~~l~td~e~s~pli~~l~~~sil~d~~~~iiervi~-dg~l~y~ 182 (202) |+--+-+ .-+.|++.|++..|+.|+ . +++..+-| .-.|+|-+. =||-||. T Consensus 1 m~~~~p~-s~~eLkdyiLRrLGAPvi-~----------------------InVtd~Qi-----~DcId~Alqly~EyHyd 51 (309) T protein:vir:71 1 MSGYNPQ-NPKELKDVILRRLGAPII-N----------------------VELTPDQI-----YDCIQRALELYGEYHFD 51 (309) T ss_pred CCCCCCC-CHHHHHHHHHHhcCCceE-E----------------------EecCHHHH-----HHHHHHHHHHhhhhhcc Confidence 2211100 012578899999999998 1 12211111 112222221 1556664 Q ss_pred CCCCceEEEEecccchhhcC Q lcl|NC_015292. 183 EGDTQAVAIHLDEHTQDYRE 202 (202) Q Consensus 183 eg~~~~~~ihldehtqdyre 202 (202) -=+.--..+|+++-..+++. T Consensus 52 G~~k~yl~~~i~~de~~~~~ 71 (309) T protein:vir:71 52 GLNKGFHVFYVGDDEERYKT 71 (309) T ss_pred ccccceEEEEeCchhhhhcc Confidence 33444445556443333333 No 8 >protein:vir:78349 Length: 127 # NCBI annotation: gp10 # Family: family:all:508 # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468649;genbank:gi:157325227;genbank:GeneID:5601695 Probab=2.15 E-value=31 Score=12.38 Aligned_cols=124 Identities=15% Similarity=0.248 Sum_probs=50.9 Q ss_pred CcccchHHHhhhHHHHHHHHHHHHhhhccCCCCcEEEecCCCCCccCCCCCCCceEEEEEecccCchhhheeeeeccCCc Q lcl|NC_015292. 1 MSLLNLEQIEDGVVKYAVETIGQLLAKDKNKRPFVIIENPSDNSNDKGLKPDMPFVSVRSIGVTTPYGFLLDVFVDEQGR 80 (202) Q Consensus 1 msll~~~~~e~g~v~~~v~~ig~~la~dkn~rp~vi~~~psdnsndkglkpd~pfisv~~~~~~tpyg~~ld~fvde~~~ 80 (202) |..+ +.++-+-|..- +++.+.. ++| .--.++|..- .-+.|||.+...+...|..|- .+.. T Consensus 1 M~d~-l~~iy~~L~~d--~~l~~~~----~~~-I~~~~~Pe~~------d~~~p~I~I~~i~~p~p~~ya------dn~~ 60 (127) T protein:vir:78 1 MIDI-LNVIYTTLSKN--DIIHTTC----EER-IKYYDFPGTG------DSTKTFLLIIPLDVPIPTNFS------SNES 60 (127) T ss_pred Ccch-HHHHHHHhhcc--hhhhhhc----CCc-eEEEecCCCc------cccCcEEEEeeCCCCCCCccc------CCcc Confidence 3221 12232322222 2333222 223 2223455432 234599999988755566554 5566 Q ss_pred EEEEeeeeeEEEEEeeCCcchhhHHHHHhhhhHHHHHHHHHhhcCceeEeecCCCCccccceeccCCCCCceeeeeeehh Q lcl|NC_015292. 81 TCYRIPFKVQIRVTATGKNSFSIISDFKQRLEISSLRARLTEYTGGAILVDSGQMPQNFDMLQTDYEPSTPLILELAVDS 160 (202) Q Consensus 81 ~cyri~f~i~i~it~~gk~~~si~~~~kqrle~ss~r~~~~e~tg~~ilvdsg~~p~~~~~l~td~e~s~pli~~l~~~s 160 (202) .|+.+-|||-|. -++...-.++++|+ +.++++-|-.=+ ++ +.|. |++.+-+.+-- T Consensus 61 l~~~~~~QIDV~-----s~~r~~~~~i~~~I------~~~M~~~gf~q~-s~-~~d~--------Y~~dtk~y~~a---- 115 (127) T protein:vir:78 61 RMEDFLVQIDVQ-----SNDRLIVKKIQDEV------RKEMKQIGFGQL-AG-GLDE--------YFPETGRFVDA---- 115 (127) T ss_pred ceeEEEEEEEEE-----EcCCCchHHHHHHH------HHHHHHcCceec-cC-CCCc--------cchhhhhhhhe---- Confidence 799998888874 12222334555543 233444443322 32 2221 22222211110 Q ss_pred eeeeccc---ceee Q lcl|NC_015292. 161 ILVDYDS---GVIE 171 (202) Q Consensus 161 il~d~~~---~iie 171 (202) .-|+| .+-| T Consensus 116 --rRYrg~~~~~y~ 127 (127) T protein:vir:78 116 --RKYSGLPYKLYQ 127 (127) T ss_pred --eeeeeccccccC Confidence 00111 0001 No 9 >protein:vir:3428 Length: 131 # NCBI annotation: tail component # Family: family:all:911 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040591;genbank:gi:9626255;genbank:GeneID:2703486 Probab=2.13 E-value=15 Score=14.09 Aligned_cols=51 Identities=27% Similarity=0.342 Sum_probs=25.2 Q ss_pred ceeccCCCCCceeeeeeehheeeecccceeeeeeeccE-EEecCCCCceEEEEecccchh--hcC Q lcl|NC_015292. 141 MLQTDYEPSTPLILELAVDSILVDYDSGVIERVIADGV-LHYGEGDTQAVAIHLDEHTQD--YRE 202 (202) Q Consensus 141 ~l~td~e~s~pli~~l~~~sil~d~~~~iiervi~dg~-l~y~eg~~~~~~ihldehtqd--yre 202 (202) |-+|.-.+ -|+ ..|+..-.++ .+-||. .+..|.|-|++++|||+-.-+ +-. T Consensus 1 ~~ht~IR~---~Vi-----d~L~~~l~~v---~~fdG~P~fide~ElPAVAV~l~d~~~~~~~ld 54 (131) T protein:vir:34 1 MKHTELRA---AVL-----DALEKHDTGA---TFFDGRPAVFDEADFPAVAVYLTGAEYTGEELD 54 (131) T ss_pred CchHHHHH---HHH-----HHHhccCCce---EEecCCceeeccccCcEEEEEeecCCCCcceec Confidence 22111100 011 1233333332 267776 566778999999999975321 111 No 10 >protein:vir:103451 Length: 309 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803103;genbank:gi:116326383;genbank:GeneID:4405480 Probab=1.89 E-value=27 Score=12.72 Aligned_cols=70 Identities=19% Similarity=0.385 Sum_probs=29.6 Q ss_pred HHHHHhhhhHHHHHHHHHhhcCceeEeecCCCCccccceeccCCCCCceeeeeeehheeeecccceeeeeee-ccEEEec Q lcl|NC_015292. 104 ISDFKQRLEISSLRARLTEYTGGAILVDSGQMPQNFDMLQTDYEPSTPLILELAVDSILVDYDSGVIERVIA-DGVLHYG 182 (202) Q Consensus 104 ~~~~kqrle~ss~r~~~~e~tg~~ilvdsg~~p~~~~~l~td~e~s~pli~~l~~~sil~d~~~~iiervi~-dg~l~y~ 182 (202) |+--+-+ .-+.|++.|++..|+.|+ . +++..+-| .-.|+|-+. =||-||. T Consensus 1 ms~~~~~-s~~eLkdyiLRrLGAPvi-~----------------------InVtd~Qi-----~DcId~Alqly~EyHyd 51 (309) T protein:vir:10 1 MSGYNSQ-NPKELKDVILRRLGAPII-N----------------------VELTPDQI-----YDCIQRALELYGEYHFD 51 (309) T ss_pred CCCCCCC-CHHHHHHHHHHhcCCceE-E----------------------EecCHHHH-----HHHHHHHHHHhhhhhcc Confidence 2211100 012578899999999998 1 12211111 012222221 1555664 Q ss_pred CCCCceEEEEecccchhhcC Q lcl|NC_015292. 183 EGDTQAVAIHLDEHTQDYRE 202 (202) Q Consensus 183 eg~~~~~~ihldehtqdyre 202 (202) -=+.--..+|+++-..+++. T Consensus 52 G~~k~y~~~~i~~de~~~~~ 71 (309) T protein:vir:10 52 GLNKGFHVFYVGDDEEKYKT 71 (309) T ss_pred ccccceEEEEeCchhhhhcc Confidence 32444444445433223332 Done!