Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : KS10 | Genbank acc : NC_011216

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 8) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 49

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	31	lcl\|NC_011216.1_cdsid_YP_002221447.1	HHsearch (proba=100.00%)
Portal	1	lcl\|NC_011216.1_cdsid_YP_002221417.1	HHsearch (proba=99.94%)
TermL	4	lcl\|NC_011216.1_cdsid_YP_002221420.1	Blast (e-value=1e-167)
MTP	NOT FOUND
Sheath	37	lcl\|NC_011216.1_cdsid_YP_002221453.1	HHsearch (proba=100.00%)
Ad1	33	lcl\|NC_011216.1_cdsid_YP_002221449.1	HHsearch (proba=99.57%)
Hc1	NOT FOUND
Ne1	34	lcl\|NC_011216.1_cdsid_YP_002221450.1	HHsearch (proba=100.00%)
Tc1	35	lcl\|NC_011216.1_cdsid_YP_002221451.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:99888 protein:vir:79078 protein:vir:107882	B3 phiE255 BcepMu	49 % 21 % 21 %
Portal	protein:vir:94666	mu1/6	20 %
TermL	protein:vir:99234 protein:vir:103868 protein:vir:79222	DMS3 D3112 Phage MP22	53 % 53 % 34 %
Sheath	protein:vir:1996 protein:vir:4517 protein:vir:489	Mu V P27	29 % 28 % 27 %
Ad1	protein:vir:1993 protein:vir:103846 protein:vir:99848	Mu D3112 B3	27 % 24 % 21 %
Ne1	protein:vir:79225 protein:vir:99196 protein:vir:103841	Phage MP22 DMS3 D3112	31 % 30 % 30 %
Tc1	protein:vir:1994 protein:vir:10327 protein:vir:96764	Mu VHML VP882	17 % 17 % 16 %