Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 1706 | Genbank acc : NC_010576

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 76

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	10	lcl\|NC_010576.1_cdsid_YP_001828658.1	HHsearch (proba=100.00%)
Portal	9	lcl\|NC_010576.1_cdsid_YP_001828657.1	HHsearch (proba=100.00%)
TermL	8	lcl\|NC_010576.1_cdsid_YP_001828656.1	Blast (e-value=1e-24)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	17	lcl\|NC_010576.1_cdsid_YP_001828665.1	HHsearch (proba=100.00%)
Tc1	12	lcl\|NC_010576.1_cdsid_YP_001828660.1	HHsearch (proba=94.11%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Tc1	5	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:1638 protein:vir:94771 protein:vir:100135	r1t phi LC3 phi1026b	18 % 17 % 16 %
Portal	protein:vir:78310 protein:vir:80333 protein:vir:101289	B025 phi644-2 phiNM3	16 % 15 % 15 %
TermL	protein:vir:3867 protein:vir:9358 protein:vir:81178	A2 phi 12 Geobacillus virus E2	22 % 22 % 21 %
Ne1	protein:vir:966 protein:vir:80116 protein:vir:102963	bIL285 bacteriophage bv1 EJ-1	28 % 21 % 21 %
Tc1	protein:vir:102086 protein:vir:102888 protein:vir:107581	Fah Cherry Gamma	21 % 21 % 21 %