Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiHAP-1 | Genbank acc : NC_010342

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 6) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 46

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	5	lcl\|NC_010342.1_cdsid_YP_001686741.1	HHsearch (proba=100.00%)
Portal	4	lcl\|NC_010342.1_cdsid_YP_001686740.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_010342.1_cdsid_YP_001686738.1	Blast (e-value=0)
MTP	21	lcl\|NC_010342.1_cdsid_YP_001686757.1	Blast (e-value=1e-40)
Sheath	20	lcl\|NC_010342.1_cdsid_YP_001686756.1	HHsearch (proba=100.00%)
Ad1	3	lcl\|NC_010342.1_cdsid_YP_001686739.1	HHsearch (proba=100.00%)
Hc1	6	lcl\|NC_010342.1_cdsid_YP_001686742.1	HHsearch (proba=100.00%)
Ne1	7	lcl\|NC_010342.1_cdsid_YP_001686743.1	HHsearch (proba=100.00%)
Tc1	8	lcl\|NC_010342.1_cdsid_YP_001686744.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad1<->Hc1	3	2
Tc1<->Ad1	5	4

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:96762 protein:vir:4856 protein:vir:4953	VP882 DT1 Sfi19	53 % 23 % 19 %
Portal	protein:vir:96738 protein:vir:79538 protein:vir:10321	VP882 cdtI VHML	49 % 22 % 20 %
TermL	protein:vir:96700 protein:vir:79539 protein:vir:10320	VP882 cdtI VHML	63 % 20 % 20 %
MTP	protein:vir:96741 protein:vir:10337 protein:vir:5712	VP882 VHML L-413C	43 % 23 % 22 %
Sheath	protein:vir:96740 protein:vir:10336 protein:vir:79181	VP882 VHML phiE202	65 % 28 % 26 %
Ad1	protein:vir:96750 protein:vir:79544	VP882 cdtI	48 % 17 %
Hc1	protein:vir:96756 protein:vir:3426 protein:vir:395	VP882 lambda N15	38 % 18 % 17 %
Ne1	protein:vir:96763 protein:vir:10326 protein:vir:3427	VP882 VHML lambda	54 % 42 % 21 %
Tc1	protein:vir:96764 protein:vir:10327 protein:vir:1994	VP882 VHML Mu	51 % 26 % 13 %