Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : DT1 | Genbank acc : NC_002072 | Aclame index mge :106

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 45

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	8	lcl\|Aclame:protein:vir:4856\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	6	lcl\|Aclame:protein:vir:4854\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	4	lcl\|Aclame:protein:vir:4852\|NCBI_annot:putative	Blast (e-value=0)
MTP	13	lcl\|Aclame:protein:vir:4861\|NCBI_annot:major	Blast (e-value=1e-117)
Sheath	NOT FOUND
Ad1	9	lcl\|Aclame:protein:vir:4857\|NCBI_annot:putative	HHsearch (proba=100.00%)
Hc1	10	lcl\|Aclame:protein:vir:4858\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ne1	11	lcl\|Aclame:protein:vir:4859\|NCBI_annot:putative	HHsearch (proba=100.00%)
Tc1	12	lcl\|Aclame:protein:vir:4860\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:4856 protein:vir:4953 protein:vir:4830	DT1 Sfi19 7201	100 % 93 % 90 %
Portal	protein:vir:4854 protein:vir:4828 protein:vir:4995	DT1 7201 Sfi21	100 % 89 % 87 %
TermL	protein:vir:4852 protein:vir:4950 protein:vir:4993	DT1 Sfi19 Sfi21	100 % 94 % 92 %
MTP	protein:vir:4861 protein:vir:4835 protein:vir:4957	DT1 7201 Sfi19	100 % 93 % 92 %
Ad1	protein:vir:4857 protein:vir:4954 protein:vir:4831	DT1 Sfi19 7201	100 % 91 % 82 %
Hc1	protein:vir:4858 protein:vir:4955 protein:vir:4832	DT1 Sfi19 7201	100 % 92 % 91 %
Ne1	protein:vir:4859 protein:vir:4833 protein:vir:4956	DT1 7201 Sfi19	100 % 93 % 91 %
Tc1	protein:vir:4860 protein:vir:4834 protein:vir:5001	DT1 7201 Sfi21	100 % 94 % 86 %