Query lcl|NC_010342.1_cdsid_YP_001686743.1 [gene=HAPgp07] [protein=hypothetical protein] [protein_id=YP_001686743.1] [location=7211..7690] Match_columns 159 No_of_seqs 102 out of 164 Neff 7.3 Searched_HMMs 1612 Date Thu Nov 7 12:45:12 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_7 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_7_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:96763 Length: 177 100.0 1.1E-51 7E-55 299.9 18.5 159 1-159 18-176 (177) 2 protein:vir:3427 Length: 192 # 100.0 3.6E-44 2.3E-47 258.7 15.4 156 1-159 9-185 (192) 3 protein:vir:396 Length: 184 # 100.0 4.6E-43 2.9E-46 252.7 16.9 158 1-158 9-184 (184) 4 protein:vir:79555 Length: 192 100.0 4.1E-42 2.5E-45 247.5 14.1 156 1-159 8-185 (192) 5 protein:vir:6375 Length: 205 # 99.8 1.2E-23 7.5E-27 146.2 13.0 157 1-157 13-205 (205) 6 protein:vir:10326 Length: 62 # 98.9 1.3E-12 7.9E-16 85.8 4.9 60 100-159 1-60 (62) 7 protein:vir:106570 Length: 182 96.9 0.00011 6.5E-08 42.4 13.3 154 1-158 12-182 (182) 8 protein:vir:79034 Length: 141 94.8 0.0021 1.3E-06 35.2 11.2 116 1-158 15-141 (141) 9 protein:vir:5745 Length: 135 # 91.8 0.0056 3.5E-06 32.9 8.6 119 1-157 13-135 (135) 10 protein:vir:105330 Length: 137 91.7 0.0042 2.6E-06 33.6 7.8 127 1-149 11-137 (137) 11 protein:vir:194 Length: 149 # 91.6 0.015 9.3E-06 30.6 12.1 135 1-158 14-149 (149) 12 protein:vir:105467 Length: 144 90.2 0.022 1.4E-05 29.7 10.5 125 1-159 11-143 (144) 13 protein:vir:396 Length: 184 # 90.2 0.0053 3.3E-06 33.1 6.9 149 1-159 6-177 (184) 14 protein:vir:4347 Length: 164 # 89.7 0.016 9.9E-06 30.4 9.1 137 1-159 15-157 (164) 15 protein:vir:94108 Length: 149 89.6 0.0099 6.1E-06 31.6 7.9 127 1-149 23-149 (149) 16 protein:vir:105916 Length: 149 88.9 0.014 8.5E-06 30.8 8.2 127 1-149 23-149 (149) 17 protein:vir:5978 Length: 144 # 88.9 0.022 1.4E-05 29.7 9.3 129 1-157 16-144 (144) 18 protein:vir:107099 Length: 137 88.8 0.0089 5.5E-06 31.8 7.1 127 1-149 11-137 (137) 19 protein:vir:94796 Length: 137 88.7 0.012 7.4E-06 31.1 7.7 127 1-149 11-137 (137) 20 protein:vir:101594 Length: 173 88.5 0.016 1E-05 30.4 8.3 149 1-155 9-173 (173) 21 protein:vir:1891 Length: 179 # 87.9 0.036 2.2E-05 28.5 11.5 144 1-159 15-172 (179) 22 protein:vir:95894 Length: 137 87.7 0.017 1E-05 30.3 7.8 127 1-149 11-137 (137) 23 protein:vir:96121 Length: 137 86.8 0.017 1.1E-05 30.2 7.4 127 1-149 11-137 (137) 24 protein:vir:94538 Length: 125 86.8 0.027 1.7E-05 29.2 8.5 108 1-159 15-125 (125) 25 protein:vir:93738 Length: 137 86.4 0.031 2E-05 28.8 8.6 127 1-149 11-137 (137) 26 protein:vir:97427 Length: 137 86.4 0.031 2E-05 28.8 8.6 127 1-149 11-137 (137) 27 protein:vir:94490 Length: 137 86.4 0.031 2E-05 28.8 8.6 127 1-149 11-137 (137) 28 protein:vir:97088 Length: 157 85.3 0.053 3.3E-05 27.6 11.5 136 1-159 13-156 (157) 29 protein:vir:95789 Length: 114 85.2 0.027 1.7E-05 29.2 7.6 104 1-157 11-114 (114) 30 protein:vir:96829 Length: 135 84.1 0.055 3.4E-05 27.5 8.8 125 1-149 11-135 (135) 31 protein:vir:105089 Length: 133 82.9 0.073 4.5E-05 26.8 9.5 119 1-155 12-133 (133) 32 protein:vir:9930 Length: 108 # 81.7 0.036 2.3E-05 28.5 6.8 102 1-158 7-108 (108) 33 protein:vir:97144 Length: 115 79.2 0.096 6E-05 26.2 8.3 105 1-157 9-115 (115) 34 protein:vir:96225 Length: 115 79.2 0.096 6E-05 26.2 8.3 105 1-157 9-115 (115) 35 protein:vir:78858 Length: 115 79.2 0.096 6E-05 26.2 8.3 105 1-157 9-115 (115) 36 protein:vir:96358 Length: 115 79.2 0.096 6E-05 26.2 8.3 105 1-157 9-115 (115) 37 protein:vir:103917 Length: 115 79.2 0.096 6E-05 26.2 8.3 105 1-157 9-115 (115) 38 protein:vir:9312 Length: 115 # 79.2 0.096 6E-05 26.2 8.3 105 1-157 9-115 (115) 39 protein:vir:1273 Length: 127 # 77.9 0.12 7.5E-05 25.6 8.9 114 1-153 12-127 (127) 40 protein:vir:79555 Length: 192 75.3 0.15 9.2E-05 25.1 9.7 148 1-158 11-192 (192) 41 protein:vir:3427 Length: 192 # 74.2 0.074 4.6E-05 26.8 6.2 152 1-159 6-181 (192) 42 protein:vir:105007 Length: 146 74.1 0.16 0.0001 24.9 9.0 127 1-156 15-146 (146) 43 protein:vir:102875 Length: 146 74.1 0.16 0.0001 24.9 9.0 127 1-156 15-146 (146) 44 protein:vir:107568 Length: 146 74.1 0.16 0.0001 24.9 9.0 127 1-156 15-146 (146) 45 protein:vir:102085 Length: 146 74.1 0.16 0.0001 24.9 9.0 127 1-156 15-146 (146) 46 protein:vir:106623 Length: 115 73.7 0.17 0.0001 24.8 9.0 105 1-157 9-115 (115) 47 protein:vir:97327 Length: 116 69.1 0.14 8.5E-05 25.3 6.5 116 12-149 1-116 (116) 48 protein:vir:1243 Length: 116 # 69.1 0.14 8.5E-05 25.3 6.5 116 12-149 1-116 (116) 49 protein:vir:966 Length: 123 # 68.0 0.24 0.00015 23.9 8.1 110 1-158 14-123 (123) 50 protein:vir:93617 Length: 148 65.7 0.28 0.00017 23.6 11.7 131 1-158 14-148 (148) 51 protein:vir:99744 Length: 115 65.5 0.28 0.00018 23.6 8.8 105 1-157 9-115 (115) 52 protein:vir:102963 Length: 163 62.3 0.34 0.00021 23.2 10.3 137 1-159 13-157 (163) 53 protein:vir:1437 Length: 140 # 62.0 0.34 0.00021 23.1 14.2 122 1-159 12-139 (140) 54 protein:vir:95062 Length: 116 61.7 0.24 0.00015 24.0 6.3 116 12-149 1-116 (116) 55 protein:vir:81147 Length: 126 60.0 0.061 3.8E-05 27.2 2.7 98 1-104 13-126 (126) 56 protein:vir:100075 Length: 140 59.9 0.38 0.00024 22.9 14.6 126 1-159 12-139 (140) 57 protein:vir:743 Length: 108 # 59.4 0.39 0.00024 22.8 8.7 102 1-157 6-108 (108) 58 protein:vir:80362 Length: 140 57.7 0.43 0.00027 22.6 13.7 124 1-159 12-139 (140) 59 protein:vir:94654 Length: 142 44.6 0.8 0.0005 21.1 10.5 128 1-153 13-142 (142) 60 protein:vir:8669 Length: 142 # 44.0 0.82 0.00051 21.0 7.5 128 1-153 11-142 (142) 61 protein:vir:99101 Length: 142 44.0 0.82 0.00051 21.0 7.5 128 1-153 11-142 (142) 62 protein:vir:3873 Length: 128 # 43.9 0.83 0.00051 21.0 8.7 114 1-153 11-128 (128) 63 protein:vir:1386 Length: 149 # 39.3 1 0.00063 20.5 10.6 131 1-158 15-149 (149) 64 protein:vir:78077 Length: 141 39.2 1 0.00064 20.5 11.4 135 1-156 6-141 (141) 65 protein:vir:102338 Length: 116 38.2 1.1 0.00067 20.4 7.2 110 12-157 1-116 (116) 66 protein:vir:9708 Length: 125 # 33.2 1.4 0.00085 19.8 9.6 115 1-154 8-125 (125) 67 protein:vir:3617 Length: 112 # 31.5 1.5 0.00093 19.6 9.4 102 1-153 10-112 (112) 68 protein:vir:98409 Length: 108 31.2 1.5 0.00094 19.6 9.1 102 1-157 6-108 (108) 69 protein:vir:100243 Length: 140 28.4 1.8 0.0011 19.2 13.0 126 1-159 12-139 (140) 70 protein:vir:95372 Length: 124 25.8 2 0.0013 18.9 8.8 112 1-158 13-124 (124) 71 protein:vir:4906 Length: 114 # 23.6 2.3 0.0014 18.6 8.1 105 1-150 9-114 (114) 72 protein:vir:2740 Length: 114 # 23.6 2.3 0.0014 18.6 8.1 105 1-150 9-114 (114) 73 protein:vir:98342 Length: 125 20.4 2.8 0.0017 18.2 8.5 110 1-157 10-125 (125) 74 protein:vir:9414 Length: 125 # 20.4 2.8 0.0017 18.2 8.5 110 1-157 10-125 (125) 75 protein:vir:81106 Length: 125 20.4 2.8 0.0017 18.2 8.5 110 1-157 10-125 (125) 76 protein:vir:79988 Length: 125 20.4 2.8 0.0017 18.2 8.5 110 1-157 10-125 (125) 77 protein:vir:4704 Length: 125 # 20.4 2.8 0.0017 18.2 8.5 110 1-157 10-125 (125) No 1 >protein:vir:96763 Length: 177 # NCBI annotation: putative phage-related protein # Family: family:all:1091 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039824;genbank:gi:126010915;genbank:GeneID:5076273 Probab=100.00 E-value=1.1e-51 Score=299.91 Aligned_cols=159 Identities=54% Similarity=0.945 Sum_probs=157.1 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCcc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPRQ 80 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r~ 80 (159) |+++|+++++++|+|+++|||+|+.|++|+++++|+++|+||+++|+++++++++++++++.||++++||++++|++|++ T Consensus 18 i~~~l~~~~~~~~~A~~rAlNrta~~~rt~~~r~v~~~~~i~~k~ir~r~~~~~a~~~~~~~i~~~~~~i~l~~~~~~r~ 97 (177) T protein:vir:96 18 IAAMVAATTKQLELAAQRAMTKAGQWLRTHSVRELGQQLGIKQEPLKKRFRVYPQRQKGEVRFWVGLDPIGVYRLGTPKV 97 (177) T ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhheeeccCCCcEEEEEEeccceehhhcccCCC Confidence 89999999999999999999999999999999999999999999999999999999899999999999999999999999 Q ss_pred ccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccC Q lcl|NC_010342. 81 TVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVLSSA 159 (159) Q Consensus 81 ~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L~~a 159 (159) +++||++|++.|+|||+++++|||+|||+|.|++||||+++++|+.++.++++|.+++++++.|+++|+|||+|+|+|= T Consensus 98 t~~Gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~~pi~~~~~~~~e~~~~~~~~~~~~~l~~Ei~~~L~g~ 176 (177) T protein:vir:96 98 TQKGVKVNRNEYDGAFISPMKSNYPLVFKRRGKERLPIDLVDEDIDEPAMEVVERWERRVFQRFKELFEQEARAIINGH 176 (177) T ss_pred CccceEEeeEEcCCceeccCCCCCceEEEEecCCccceEEEEcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:3427 Length: 192 # NCBI annotation: tail component # Family: family:all:869 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040590;genbank:gi:9626254;genbank:GeneID:2703485 Probab=100.00 E-value=3.6e-44 Score=258.73 Aligned_cols=156 Identities=21% Similarity=0.286 Sum_probs=138.4 Q ss_pred ChHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecC-CCcEEEEEEcccccchhhccCC Q lcl|NC_010342. 1 MPELINA-TKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRI-ADGEVKVWVGLTPLSVHYLGDP 78 (159) Q Consensus 1 i~~~l~~-~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~-~~~~~~i~~~~~~i~~~~~g~~ 78 (159) +.+.|++ .++++|+|+++|||+|+.|++|+++++|+++|+||+++|++++++++++ +++++.|+++++|+|+++|+.+ T Consensus 9 ~~~~L~~i~~~~vp~A~~rAiNrta~~a~t~~~r~v~~e~~I~~k~Ir~r~r~~kAs~~~l~a~I~~~~~~l~~~~l~~~ 88 (192) T protein:vir:34 9 AVENLSRISKTAVPGAAAMAINRVASSAISQSASQVARETKVRRKLVKERARLKRATVKNPQARIKVNRGDLPVIKLGNA 88 (192) T ss_pred HHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhheeccccCCCceEEEEEeccceeeeeeccc Confidence 4444444 5667999999999999999999999999999999999999999999887 6789999999999999999876 Q ss_pred ccc------------------cceeEEeeEEccCceecccCCCCeeEEEEc-CCcccceeeEeeccccchHHHHHHHHHH Q lcl|NC_010342. 79 RQT------------------VTGVRVGRKNYDSAFVNPMRSRQVMVWRRE-GRERLPIERVTEEIAELGEAVVRRWERR 139 (159) Q Consensus 79 r~~------------------~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~-gk~R~PI~~~~ip~~~~~~~v~~~~~~~ 139 (159) +.+ .+++++|++.|+|||+++|+|||+|||+|+ |++||||++++||+..+.+++++. + T Consensus 89 ~~~~~rr~~~~~~~~~~~~~~g~~~k~Gk~~f~gaFia~m~ng~~~Vf~R~~gk~R~PIe~vkIpis~~l~~af~~---~ 165 (192) T protein:vir:34 89 RVVLSRRRRRKKGQRSSLKGGGSVLVVGNRRIPGAFIQQLKNGRWHVMQRVAGKNRYPIDVVKIPMAVPLTTAFKQ---N 165 (192) T ss_pred ccccccccccccccccccccccceeeecceecCCcccccCCCCCceeEEEccCCCccceeEEEechhHHHHHHHHH---H Confidence 533 456889999999999999999999999995 999999999999998877777654 7 Q ss_pred HHHHHHHHHHHHHHHHhccC Q lcl|NC_010342. 140 VEARFIELFEQEARYVLSSA 159 (159) Q Consensus 140 ~~~~~~~~l~~Ei~~~L~~a 159 (159) .++.|+++|+|||.|+|+.- T Consensus 166 ~~~~~~~~~~~El~~~L~~~ 185 (192) T protein:vir:34 166 IERIRRERLPKELGYALQHQ 185 (192) T ss_pred HHHHHHHHHHHHHHHHHHHH Confidence 88888889999999988888 No 3 >protein:vir:396 Length: 184 # NCBI annotation: gp11 # Family: family:all:869 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046906;genbank:gi:9630476;genbank:GeneID:1261650 Probab=100.00 E-value=4.6e-43 Score=252.68 Aligned_cols=158 Identities=18% Similarity=0.293 Sum_probs=128.7 Q ss_pred ChHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecC-CCcEEEEEEcccccchhhccC- Q lcl|NC_010342. 1 MPELINA-TKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRI-ADGEVKVWVGLTPLSVHYLGD- 77 (159) Q Consensus 1 i~~~l~~-~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~-~~~~~~i~~~~~~i~~~~~g~- 77 (159) +.+.|.+ .++++|+|+++|||+|+.|++|+++++++++|+||+++|++++++++++ +++++.||++++||++++||+ T Consensus 9 ~~~~L~~l~~~~v~kA~~rAiNrt~~~~rt~~~r~v~~~~~i~~~~ir~r~~~~kas~~~l~a~I~~~~~~i~l~~~g~~ 88 (184) T protein:vir:39 9 AIENLNSISKTAVPRASAQAVNRVANRAVSRSVAVVSKDTRVPRKLVKQRARVKRATVNKPRALIRVNRGNLPAIKLGTA 88 (184) T ss_pred HHHHHhccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhheecccCCCCeEEEEEEeccceeeeecccc Confidence 4445555 5788999999999999999999999999999999999999999998876 678999999999999999974 Q ss_pred ------Cccccce----eEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHH-HHHHH----HHH Q lcl|NC_010342. 78 ------PRQTVTG----VRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVR-RWERR----VEA 142 (159) Q Consensus 78 ------~r~~~~g----v~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~-~~~~~----~~~ 142 (159) +++++.| +++|++.|+|||+++++|||+|||+|.|++||||+++++|+.++.+++++ ++.+. ++. T Consensus 89 ~~k~~~~~~~~~~~~~~~~~g~~~~~gaFia~~~~G~~~Vf~R~gk~R~PI~~~~~~i~~~~~e~~~~~~~~~~~~~~~~ 168 (184) T protein:vir:39 89 SVRLSRRKRDKKGANSVLRIGPFRFPGGFIQQLKNGRWHVMRRTSKPRYPIEVVSIPLAAPLTTAFKEELPKLMESDMPK 168 (184) T ss_pred ccccCccccccccccceeeecceecCcceeeecCCCceEEEEEecCcccceeEEEcCchHHHHHHHHHHHHHHHHHHHHH Confidence 3444444 56789999999999999999999999999999999999999888655544 44333 444 Q ss_pred HHHHHHHHHHHHHhcc Q lcl|NC_010342. 143 RFIELFEQEARYVLSS 158 (159) Q Consensus 143 ~~~~~l~~Ei~~~L~~ 158 (159) .|+.+|+|||++.|++ T Consensus 169 el~~~l~~~L~~~l~r 184 (184) T protein:vir:39 169 ELRASLTNQLRLILTR 184 (184) T ss_pred HHHHHHHHHHhhhcCC Confidence 4444444444444555 No 4 >protein:vir:79555 Length: 192 # NCBI annotation: putative tail component # Family: family:all:869 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272521;genbank:gi:148609390;genbank:GeneID:5204391 Probab=100.00 E-value=4.1e-42 Score=247.49 Aligned_cols=156 Identities=19% Similarity=0.283 Sum_probs=135.3 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hcCcHHHHHHHheeeecC--CCcEEEEEEccccc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRE--------LGIVQRPLRQRFRMYSRI--ADGEVKVWVGLTPL 70 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~--------~~ik~k~vr~~~~~~~a~--~~~~~~i~~~~~~i 70 (159) |+++-+...+.+|+|..+|||+++.++.+++++.|+.+ ++||+++|++|+++++++ +.+++.||+|.+|| T Consensus 8 ~~nl~~l~~~~vp~A~~~ainrva~ra~~~t~~~v~~~~~~~~~~~~~I~~k~iR~R~r~~ka~~~~~~~~~I~v~~~~l 87 (192) T protein:vir:79 8 IRNLNSLDTRMVPQASAWAINRVAQKAVSVATRQVAGNTVAGDNQVKGIPLKLVRQRVRVFKASPSGKMTARIRVNRGNL 87 (192) T ss_pred HHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcHHHHHhhhhcccccCCCceEEEEEEecCce Confidence 66666667778999999999998888888888888776 699999999999999876 35799999999999 Q ss_pred chhhccCCc-----------cccceeEEeeEEccCceecccCCCCeeEEEE-cCCcccceeeEeeccccchHHHHHHHHH Q lcl|NC_010342. 71 SVHYLGDPR-----------QTVTGVRVGRKNYDSAFVNPMRSRQVMVWRR-EGRERLPIERVTEEIAELGEAVVRRWER 138 (159) Q Consensus 71 ~~~~~g~~r-----------~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R-~gk~R~PI~~~~ip~~~~~~~v~~~~~~ 138 (159) |+++||+++ ++.+|+++|+|.|+|||+++|+||+||||+| .|++||||++++||+.++.+++++. T Consensus 88 ~ai~lg~~r~r~~rr~~~~~~~~s~~~vGk~~f~gaFia~m~ngr~~V~~R~~gk~R~PIevvkIpis~~l~~af~~--- 164 (192) T protein:vir:79 88 PAIKLGTARVRLARRGGKLQYRGSVLKVGKYLFRDAFIQQLANGRWHVMRRIDGKNRYPIDVVKIPLSGPLTQAFED--- 164 (192) T ss_pred eeeeecccccccccccccccccccceEEcceecCchhccccCCCCccceEecCCCccCCeeeEeechHHHHHHHHHH--- Confidence 999999775 6788899999999999999999999999999 5999999999999998888877665 Q ss_pred HHHHHHHHHHHHHHHHHhccC Q lcl|NC_010342. 139 RVEARFIELFEQEARYVLSSA 159 (159) Q Consensus 139 ~~~~~~~~~l~~Ei~~~L~~a 159 (159) +.++.|+++|++||+|+|+.- T Consensus 165 e~~r~~~~~~~~el~~~L~~q 185 (192) T protein:vir:79 165 ARDRIIAAEMPKQLGYALKQQ 185 (192) T ss_pred HHHHHHHHHHHHHHHHHHHHH Confidence 566667777777777777766 No 5 >protein:vir:6375 Length: 205 # NCBI annotation: hypothetical protein # Family: family:all:10491 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918988;genbank:gi:34610163;genbank:gi:91214209;genbank:GeneID:2559587 Probab=99.84 E-value=1.2e-23 Score=146.23 Aligned_cols=157 Identities=16% Similarity=0.161 Sum_probs=130.0 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcHHHHHH--Hheeee-c-CCCcEEEEEEcccccchhhc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRE-LGRELGIVQRPLRQ--RFRMYS-R-IADGEVKVWVGLTPLSVHYL 75 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~-v~~~~~ik~k~vr~--~~~~~~-a-~~~~~~~i~~~~~~i~~~~~ 75 (159) +.++|..+++.+.+|+.+|||+|+.++++.++++ +.++|++|...|+. ||++.+ | .+++++.|..+..|+.|.+| T Consensus 13 ~~~~l~~l~~~~~~a~~~AIN~ta~~~~~~~A~~~i~~~vn~k~~yv~~~~Rlti~k~As~~~L~A~I~ar~rpt~LsRF 92 (205) T protein:vir:63 13 FRDYVDRLPDISQQAAMIAINQTAQRTALPLARTEIGEQVNFPDNYLKDDSRLGVTKKATRNDLEAVIGARQRPTSLARF 92 (205) T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHhhhhccccchhhhccceeeEEEeecCCCCeeEEEecCCCcceeeec Confidence 8899999999999999999999999999999996 89999999999995 777644 5 47899999999999999999 Q ss_pred cCCcccc-----ceeEE----e-eEEccCceecccC--------CCCeeEEEEcCCcccce------------eeEeecc Q lcl|NC_010342. 76 GDPRQTV-----TGVRV----G-RKNYDSAFVNPMR--------SRQVMVWRREGRERLPI------------ERVTEEI 125 (159) Q Consensus 76 g~~r~~~-----~gv~~----g-~~~~~gaFia~~~--------~g~~~Vf~R~gk~R~PI------------~~~~ip~ 125 (159) +.|..+. +||+| | -+.|+|+|+.+++ |||.+||.|.+..++|+ +.+..|- T Consensus 93 ~~p~~~~~~~r~~GVsV~Vk~G~ak~l~gaF~~~lk~g~~l~e~~~~vgva~R~~~g~~~~~~~g~~k~~~~~k~LYGPS 172 (205) T protein:vir:63 93 AEPGQTTKSTRKGGVSVVVKPGRTKQFKRGFLVRLRAGKTLTEDKYNLGLAVRLSPGETLHATDGATKLSNNVYLLYGPS 172 (205) T ss_pred cCCCccccccccCCeEEEEEcCCCeeccCceEEEeeccccccccccceEEEeeecCccccccccCceecCCceEEEEcCc Confidence 8776554 47766 3 3589999999997 89999999999888885 4455553 Q ss_pred ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|NC_010342. 126 AEL-GEAVVRRWERRVEARFIELFEQEARYVLS 157 (159) Q Consensus 126 ~~~-~~~v~~~~~~~~~~~~~~~l~~Ei~~~L~ 157 (159) .+. ...+.|.+.+.+.+.+.+.|++|+-++++ T Consensus 173 V~Qvf~~~~e~I~~~i~~~l~~~f~r~~~~~~~ 205 (205) T protein:vir:63 173 VDQVFRTVADDITTEVLDALADEFLRQFTRLSE 205 (205) T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHhhhhhcC Confidence 222 34455677777888888888888888888 No 6 >protein:vir:10326 Length: 62 # NCBI annotation: ORF28 # Family: family:all:1091 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758921;genbank:gi:27311195;genbank:GeneID:956157 Probab=98.94 E-value=1.3e-12 Score=85.81 Aligned_cols=60 Identities=42% Similarity=0.705 Sum_probs=58.5 Q ss_pred cCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccC Q lcl|NC_010342. 100 MRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVLSSA 159 (159) Q Consensus 100 ~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L~~a 159 (159) |++.+..||+|.||.|+||+.+.+||.++.++|++.+++.++.+|.+.|++|++|+|+-- T Consensus 1 M~S~~llVfRR~gkeRlpIe~V~~dI~e~~~~ivery~~r~~~rF~elf~qE~~yvLs~~ 60 (62) T protein:vir:10 1 MKSEHLNVFRRKGRERLPIEVVRLPIEEQSNPIFERYYQRAQGRFTELLRQELNFALNHE 60 (62) T ss_pred CCCCccchhhccCccccchhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc Confidence 999999999999999999999999999999999999999999999999999999999865 No 7 >protein:vir:106570 Length: 182 # NCBI annotation: putative protein # Family: family:all:6475 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958588;genbank:gi:41179258;genbank:GeneID:2717106 Probab=96.94 E-value=0.00011 Score=42.39 Aligned_cols=154 Identities=9% Similarity=0.015 Sum_probs=90.4 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecC--CCcEEEEEEcccccchhhccCC Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRI--ADGEVKVWVGLTPLSVHYLGDP 78 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~--~~~~~~i~~~~~~i~~~~~g~~ 78 (159) |.+.|..+++.+.+++..|+.+++..+-..+.+++....-+..+.++++|+..... ...++.||.+..-=....||+. T Consensus 12 L~~kl~~~~~~~~~~v~~a~~~~~~~~a~~v~~~ak~~~PvdtG~Lr~SI~~~~~~~~~~~~g~V~~~~~ya~yvE~GTG 91 (182) T protein:vir:10 12 LRAKLKKLPDIMAKATANAQENAIEQAEAYAVDELQSSIKYSTGELTRSFKHEVKVDGDEVIGRWWNSSMVAVFREFGTG 91 (182) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhhhhceeeeeeecCCeEEEEeecCCCccceeecCcc Confidence 77789999999999999999999999888888888777778889999999754333 3445667765433334455642 Q ss_pred cc---ccceeE----Ee----eEEccCceecccCCCCeeEEEEcCCc-ccceeeEeeccccc---hHHHHHHHHHHHHHH Q lcl|NC_010342. 79 RQ---TVTGVR----VG----RKNYDSAFVNPMRSRQVMVWRREGRE-RLPIERVTEEIAEL---GEAVVRRWERRVEAR 143 (159) Q Consensus 79 r~---~~~gv~----~g----~~~~~gaFia~~~~g~~~Vf~R~gk~-R~PI~~~~ip~~~~---~~~v~~~~~~~~~~~ 143 (159) -. ...|+. .. ...|+..++.....++.++|.=.+.. ++ ...+-|.+ ....++...+++.+. T Consensus 92 ~~~~~~~~~~~p~~~~~~~~~~w~~~~~~v~~~~a~~~~~~~~~~~~~~~----~~t~G~~aqPFl~pA~~~~~~~i~~~ 167 (182) T protein:vir:10 92 LVGERSHKQLPKNVAIIYRQTPWFFPVDSVDLDLTKIYGIPKIKINGKYF----YRTTGQPARQFMTPAANKMAKEAPEI 167 (182) T ss_pred cccccCccccCccceeeeecCCceeeccccccccccccccceeeecCceE----eecCCCCCCcchHHHHHHhHHHHHHH Confidence 11 111111 00 11111222211111122222111110 10 01111111 445667778888889 Q ss_pred HHHHHHHHHHHHhcc Q lcl|NC_010342. 144 FIELFEQEARYVLSS 158 (159) Q Consensus 144 ~~~~l~~Ei~~~L~~ 158 (159) +.+.+..+|+..|.| T Consensus 168 i~~~i~~~l~~~~g~ 182 (182) T protein:vir:10 168 IKRSIDQELHDKLGG 182 (182) T ss_pred HHHHHHHHHHHhhcC Confidence 999999999999999 No 8 >protein:vir:79034 Length: 141 # NCBI annotation: hypothetical protein # Family: family:all:1892 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110729;genbank:gi:134287346;genbank:GeneID:4955208 Probab=94.79 E-value=0.0021 Score=35.23 Aligned_cols=116 Identities=15% Similarity=0.057 Sum_probs=52.2 Q ss_pred ChHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeec-------CCCcEEEEEEcccccch Q lcl|NC_010342. 1 MPELI-NATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSR-------IADGEVKVWVGLTPLSV 72 (159) Q Consensus 1 i~~~l-~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a-------~~~~~~~i~~~~~~i~~ 72 (159) +.+.| ...+.++++.+..+++.++..+. +.+.+.+-+..+.+++....... ..+....|.++. +.+. T Consensus 15 ~~~~l~~~~~~~~~~~~~~~~~~~a~~l~----~~vk~~tPVdTG~Lr~sw~~~~~~~~~~~~~~g~~~~v~v~n-~~~Y 89 (141) T protein:vir:79 15 VCKKMEKLTKIDLDKFCKDAARELAARLL----GKVIRRTPVDTGFLRQGWNGVAYARSLPVYKQGNNYIIEVVN-PTEY 89 (141) T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHhCCCcchhhcccccccccccccceeecCCeeEEEEec-CCcc Confidence 33333 33445566666666666665554 45556667777888887643211 112222233322 2222 Q ss_pred hh---ccCCccccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 73 HY---LGDPRQTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFE 149 (159) Q Consensus 73 ~~---~g~~r~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~ 149 (159) -+ +|+.. .. |+...+|+| ..+...+.++..+.+.+++.|+ T Consensus 90 A~~VE~Ghr~--~~----~~gfV~G~f-------------------------------ml~~s~~~~~~~~~~~~~~~l~ 132 (141) T protein:vir:79 90 ASYVNFGHRT--KD----GKGWVKGQH-------------------------------FLTISEMELQSQVDKIIEKKLL 132 (141) T ss_pred hhhhhcceee--cC----CcceeCCch-------------------------------hHHHHHHHHHHHHHHHHHHHHH Confidence 22 24311 10 111222222 1233334445555555555555 Q ss_pred HHHHHHhcc Q lcl|NC_010342. 150 QEARYVLSS 158 (159) Q Consensus 150 ~Ei~~~L~~ 158 (159) .-|+..+.+ T Consensus 133 ~~l~~~~~~ 141 (141) T protein:vir:79 133 ILLKGVFDA 141 (141) T ss_pred HHHHHhhcC Confidence 555555555 No 9 >protein:vir:5745 Length: 135 # NCBI annotation: hypothetical protein # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892056;genbank:gi:33770519;interpro:IPR010064;interpro:IPR011693;uniprot:Q7Y404;genbank:GeneID:2637451 Probab=91.79 E-value=0.0056 Score=32.93 Aligned_cols=119 Identities=13% Similarity=0.056 Sum_probs=51.9 Q ss_pred ChHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCc Q lcl|NC_010342. 1 MPELINATKKQL-DTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPR 79 (159) Q Consensus 1 i~~~l~~~~~~~-~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r 79 (159) +.+.|...+..+ .++...||...+.-+...+...+.....-..+.+++.+.+.... .+ T Consensus 13 l~~~l~~L~~~~~~k~~~~Al~~~a~~v~~~~k~~ap~~~~~~~g~l~~~I~i~~~k---------------------~~ 71 (135) T protein:vir:57 13 LERRLIAVGEEVGTKILRDAGRAAMAVVEADMKQNAGYDNSSTNAHMRDSIKIRSSR---------------------GK 71 (135) T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhhHHhhccccccc---------------------cc Confidence 667777777776 46667888888777766655443322222234555555433211 11 Q ss_pred cccceeE--EeeEEccCceecccCCCC-eeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|NC_010342. 80 QTVTGVR--VGRKNYDSAFVNPMRSRQ-VMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVL 156 (159) Q Consensus 80 ~~~~gv~--~g~~~~~gaFia~~~~g~-~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L 156 (159) .+..++. +|. .+..+ ..+|.=-|.++.|= =|. ....++...+++.+.|.+.|..+|+... T Consensus 72 ~~~~~v~v~vg~----------~~~~~~~~~f~E~GT~~~~a----~PF---~~pa~~~~~~~~~~~~~~~~~~~l~ka~ 134 (135) T protein:vir:57 72 AGSTVVVLRVGP----------TRSHYMKALAQEFGTIKQVA----KPF---IRPALDYNKMQVLRILTVEIRDGLSTLS 134 (135) T ss_pred ccceeEEEEecC----------CCCcceeEeecccCCCCCCC----Ccc---hhHhHHHhHHHHHHHHHHHHHHHHHHhc Confidence 1111111 111 01111 13344445544320 111 2333344444444444444444444443 Q ss_pred c Q lcl|NC_010342. 157 S 157 (159) Q Consensus 157 ~ 157 (159) . T Consensus 135 r 135 (135) T protein:vir:57 135 R 135 (135) T ss_pred C Confidence 3 No 10 >protein:vir:105330 Length: 137 # NCBI annotation: hypothetical protein # Family: family:all:180 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950673;genbank:gi:119967843;genbank:GeneID:4643209 Probab=91.72 E-value=0.0042 Score=33.61 Aligned_cols=127 Identities=9% Similarity=-0.013 Sum_probs=61.5 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCcc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPRQ 80 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r~ 80 (159) +.+.|...++.+.+++.+||.+++..+...+... .-++-+.+++.+++....++.++.|.++..--....||+... T Consensus 11 l~~~l~~~~~~~~~~~~~al~~~a~~i~~~ak~~----aPv~TG~Lr~SI~~~~~~~~~~~~V~~~~~YA~~vE~GT~~~ 86 (137) T protein:vir:10 11 LVKELEEFEKETIRWAKKGIAKTTTIIHNSIVSN----MPVDTGYLRESVSMDFKKGGLTGVINIGSEYAVYVNYGTGIY 86 (137) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCcCcchhhcCeeeEecCCcEEEEEecCCccccccccCcccc Confidence 6777777788888888888877776665555443 345678899999877656667777777654444445664222 Q ss_pred ccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 81 TVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFE 149 (159) Q Consensus 81 ~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~ 149 (159) ...+.. +......|.....+|.+ .+ -|-+. ....+....++..+.|.++|- T Consensus 87 ~~~~~~--~~~~~~~~~~~~~~~~~---~~------------t~g~~-a~Pfl~pA~~~~~~~i~k~i~ 137 (137) T protein:vir:10 87 AVGPGG--SRAKNIPWRYKDADGHW---HT------------TKGQH-AQPFWEPAIDEGRAFFNKYFS 137 (137) T ss_pred ccCCCc--ccccccceeeecccccc---cc------------CCCCC-CCcchhHHHHHHHHHHHHhhC Confidence 111100 00000001111111211 11 11111 112222222233333333333 No 11 >protein:vir:194 Length: 149 # NCBI annotation: Gp10 # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037704;genbank:gi:9634169;genbank:GeneID:1262536 Probab=91.62 E-value=0.015 Score=30.58 Aligned_cols=135 Identities=13% Similarity=0.157 Sum_probs=65.8 Q ss_pred ChHHHhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCc Q lcl|NC_010342. 1 MPELINATKKQLD-TAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPR 79 (159) Q Consensus 1 i~~~l~~~~~~~~-~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r 79 (159) +.+.|+.++..+. +++..|+..++.-+...+...+ -.....+++.+++....+.....+..+... ... ..+ T Consensus 14 l~~~l~~l~~~~~~~~~~~al~~~a~~i~~~ak~~a----P~~~g~l~~si~~~~~~~~~~~~~~~~v~~---~~~-~~~ 85 (149) T protein:vir:19 14 IAKDLEALSRAENNKVLRDATRAGAEVLKEEVIDRA----PVRTGKLKKNVVVVTQKSRRRGEISSGVHI---RGV-NPR 85 (149) T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CCCchhhhhhccccccccccccceeecccc---ccc-ccc Confidence 4455565555554 5666677777766666655543 334567777776543332222222221111 111 111 Q ss_pred cccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc Q lcl|NC_010342. 80 QTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVLSS 158 (159) Q Consensus 80 ~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L~~ 158 (159) .......+....-..+|.+. |.--|.+.. |-.+=....++.-.+++.+.|...|.++|+..|++ T Consensus 86 ~~~~~~~~~~~~~~~~~y~~--------f~E~GT~~~-------~a~PF~~pA~~~~k~~~~~~~~~~l~~~l~k~~~k 149 (149) T protein:vir:19 86 TGNSDNTMKANNPRNAFYWR--------FVELGTANM-------PAHPFVRPAYDTREEEAASVAIARMNQAIDEVLSK 149 (149) T ss_pred cccccceeecCCCCccceee--------eeccCCCCC-------CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC Confidence 11111111111111223221 222222221 21111456677777888889999999999999999 No 12 >protein:vir:105467 Length: 144 # NCBI annotation: hypothetical protein # Family: family:all:1892 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529877;genbank:gi:90592617;genbank:GeneID:3974531 Probab=90.20 E-value=0.022 Score=29.66 Aligned_cols=125 Identities=14% Similarity=0.144 Sum_probs=58.1 Q ss_pred ChHHHhhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeec---CCCcEEEEEEcccccch Q lcl|NC_010342. 1 MPELINATKKQ-----LDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSR---IADGEVKVWVGLTPLSV 72 (159) Q Consensus 1 i~~~l~~~~~~-----~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a---~~~~~~~i~~~~~~i~~ 72 (159) +.+.+....+. +++.+..+++.++. +..+.+.+.+-+.-+.+++.+++... .+..++.|-.+..=-++ T Consensus 11 l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~----~~~~~vk~~tPVdTG~Lr~S~~~~~~~~~~~~~~~~V~n~~~YA~~ 86 (144) T protein:vir:10 11 FQQFASRVRQKIDSGYVKQELGKSSRRIGT----QSLRILEANTPVKQGNLRRSWTAEGPTYGCGGWTIKLINNAEYASY 86 (144) T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHH----HHHHHHHHhCCCCcchhccceeecceeeecCeeEEEEecCCCcccc Confidence 34444433333 34445555555554 44556666677888899998876433 23334444322222233 Q ss_pred hhccCCccccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 73 HYLGDPRQTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEA 152 (159) Q Consensus 73 ~~~g~~r~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei 152 (159) ..+|+. +. +|.|+....+| +-.. .|| + .-.++.-.++++..|++.|+.+| T Consensus 87 VE~Ghr-~~-----------~G~~v~~~~~~------------~~~g--~V~---G-~~~~~~a~~~~~~~~~~~l~k~l 136 (144) T protein:vir:10 87 VESGHR-QT-----------PGRYVPVLKKR------------LVRD--WVP---G-QFYMKKSIPQIQRQLPQLVTEGL 136 (144) T ss_pred ccccee-ec-----------CCcccccCCCc------------cccc--eec---C-ccchHHHHHHHHHHHHHHHHHHH Confidence 334542 11 22233211111 0000 111 1 12344445566666666666666 Q ss_pred HHHhccC Q lcl|NC_010342. 153 RYVLSSA 159 (159) Q Consensus 153 ~~~L~~a 159 (159) .-++.-- T Consensus 137 ~~l~d~~ 143 (144) T protein:vir:10 137 WGLKDLF 143 (144) T ss_pred HHHhhhc Confidence 6665555 No 13 >protein:vir:396 Length: 184 # NCBI annotation: gp11 # Family: family:all:869 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046906;genbank:gi:9630476;genbank:GeneID:1261650 Probab=90.16 E-value=0.0053 Score=33.07 Aligned_cols=149 Identities=13% Similarity=0.088 Sum_probs=72.9 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEE-Ecccccc-hhhccCC Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVW-VGLTPLS-VHYLGDP 78 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~-~~~~~i~-~~~~g~~ 78 (159) |+++.....+-.++++.+|+.++...+=..+...+.++.. +...+....=.....++ ...+.+. -+..+ T Consensus 6 l~~~~~~L~~l~~~~v~kA~~rAiNrt~~~~rt~~~r~v~-------~~~~i~~~~ir~r~~~~kas~~~l~a~I~~~-- 76 (184) T protein:vir:39 6 LEQAIENLNSISKTAVPRASAQAVNRVANRAVSRSVAVVS-------KDTRVPRKLVKQRARVKRATVNKPRALIRVN-- 76 (184) T ss_pred HHHHHHHHhccCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhcCCHHHHHhhheecccCCCCeEEEEEEe-- Confidence 6666666666678888999988888887777777666654 22222211100011111 1111111 11110 Q ss_pred cccccee-EEee--------EEccCceecccCCCC---eeEEE-EcCCcccceee-E---eecc---ccc-hHHHHHHHH Q lcl|NC_010342. 79 RQTVTGV-RVGR--------KNYDSAFVNPMRSRQ---VMVWR-REGRERLPIER-V---TEEI---AEL-GEAVVRRWE 137 (159) Q Consensus 79 r~~~~gv-~~g~--------~~~~gaFia~~~~g~---~~Vf~-R~gk~R~PI~~-~---~ip~---~~~-~~~v~~~~~ 137 (159) -..-.+ +.|. .....+.-+....|. .+-|. +....+..|=. . +.|| ..+ .++..+.++ T Consensus 77 -~~~i~l~~~g~~~~k~~~~~~~~~~~~~~~~~g~~~~~gaFia~~~~G~~~Vf~R~gk~R~PI~~~~~~i~~~~~e~~~ 155 (184) T protein:vir:39 77 -RGNLPAIKLGTASVRLSRRKRDKKGANSVLRIGPFRFPGGFIQQLKNGRWHVMRRTSKPRYPIEVVSIPLAAPLTTAFK 155 (184) T ss_pred -ccceeeeeccccccccCccccccccccceeeecceecCcceeeecCCCceEEEEEecCcccceeEEEcCchHHHHHHHH Confidence 000000 0110 000011111111111 01232 22333444422 1 3453 334 456678899 Q ss_pred HHHHHHHHHHHHHHHHHHhccC Q lcl|NC_010342. 138 RRVEARFIELFEQEARYVLSSA 159 (159) Q Consensus 138 ~~~~~~~~~~l~~Ei~~~L~~a 159 (159) +++++.|+++|+|||+++|+.- T Consensus 156 ~~~~~~~~~~~~~el~~~l~~~ 177 (184) T protein:vir:39 156 EELPKLMESDMPKELRASLTNQ 177 (184) T ss_pred HHHHHHHHHHHHHHHHHHHHHH Confidence 9999999999999999999988 No 14 >protein:vir:4347 Length: 164 # NCBI annotation: Orf14 # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061510;genbank:gi:9635606;genbank:GeneID:1262873 Probab=89.72 E-value=0.016 Score=30.43 Aligned_cols=137 Identities=10% Similarity=0.070 Sum_probs=64.9 Q ss_pred ChHHHhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHheeeecC----CCcEEEEEEcccccchhh Q lcl|NC_010342. 1 MPELINATKKQLD-TAVNRALRGAGQWLRTHSVRELGRE-LGIVQRPLRQRFRMYSRI----ADGEVKVWVGLTPLSVHY 74 (159) Q Consensus 1 i~~~l~~~~~~~~-~A~~rAlnrt~~~~~t~~~r~v~~~-~~ik~k~vr~~~~~~~a~----~~~~~~i~~~~~~i~~~~ 74 (159) |.+.|..++..+. +++..||...+.-+...+...+... ..-....+++.+.+.... ........++...-.... T Consensus 15 L~~~l~~L~~~~~~k~~r~Al~~aa~~v~~~ak~~ap~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~vg~~~~~~~~ 94 (164) T protein:vir:43 15 LLGKLDSVTDDVKRRGGRAALRKAAMIVVQAAKQGAEKVDDPGTGRSISDNIALRWNGRLFKRTGDLGFRIGVLHGAVLP 94 (164) T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCccchhhhhhhhhcccCccccccceeEEeccccccccc Confidence 6777777777764 6778888888877777766665431 122234566655443211 111111111111000000 Q ss_pred ccCCccccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 75 LGDPRQTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARY 154 (159) Q Consensus 75 ~g~~r~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~ 154 (159) . ...+.++..+. .+|.+. |.=-|.+..| .=|. ....++.-.+++.+.|...|.+||+. T Consensus 95 ~---~~~~~~~~~~~----~~~y~~--------f~EfGT~km~----a~PF---lrPA~~~~k~~~~~~~~~~l~~~i~k 152 (164) T protein:vir:43 95 K---KGERSDKTANA----PTPHWR--------LLEFGTEDMR----AQPF---MRSALADNIAEVTSTFVSEYEKGIDR 152 (164) T ss_pred c---cccccccCCCC----CcceEE--------EeecCCCCCC----CCcc---hhhhHHHhHHHHHHHHHHHHHHHHHH Confidence 0 00000000011 122211 2222333211 1122 34556666677777888888888888 Q ss_pred HhccC Q lcl|NC_010342. 155 VLSSA 159 (159) Q Consensus 155 ~L~~a 159 (159) .|++| T Consensus 153 a~~k~ 157 (164) T protein:vir:43 153 AIKRA 157 (164) T ss_pred HHHHH Confidence 88888 No 15 >protein:vir:94108 Length: 149 # NCBI annotation: ORF029 # Family: family:all:180 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240238;genbank:gi:66395914;genbank:GeneID:5133277 Probab=89.61 E-value=0.0099 Score=31.57 Aligned_cols=127 Identities=9% Similarity=-0.055 Sum_probs=62.3 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCcc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPRQ 80 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r~ 80 (159) +.+.|+..++.+..++.+|+.+++..+...+...+ -+.-+.+++.|.+....++.++.|..+..--....+|+... T Consensus 23 l~~~L~~~~~~~~~~~~~al~~~a~~v~~~ak~~a----PvdTG~Lr~SI~~~~~~~g~~~~V~~~~~YA~~VE~GT~~~ 98 (149) T protein:vir:94 23 MVVELDKFDKKIEEWVKKGIAKTTTKIYNTAVALA----PVDLGFLEESIDFKYFDGGLSSVISVGADYAIYVEYGTGIY 98 (149) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CcccchhhcCeeEEeeCCcEEEEEecCCCcccccccCcccc Confidence 77778888888888888888888887777665443 34567899988877655666777776654334445665322 Q ss_pred ccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 81 TVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFE 149 (159) Q Consensus 81 ~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~ 149 (159) ...+.......++ |.-.... +.|.+ .|-+.+ ...+....++..+.|.++|. T Consensus 99 ~~~~~~~~~~~~~--~~~~~~~---~~~~~------------~~g~~a-~PFl~pA~~~~~~~i~~~i~ 149 (149) T protein:vir:94 99 ATGPGGSRATKIP--WSFKGDD---GEWYT------------TYGQAP-QPFWNPAIDAGRKTFEQYFS 149 (149) T ss_pred ccCCCcccccccc--ceeecCc---cceec------------CCCCCC-CcchHHHHHHHHHHHHHhhC Confidence 1111100000011 1111111 11111 122222 22222222222222222222 No 16 >protein:vir:105916 Length: 149 # NCBI annotation: hypothetical protein # Family: family:all:180 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004379;genbank:gi:122891834;genbank:GeneID:4712387 Probab=88.92 E-value=0.014 Score=30.79 Aligned_cols=127 Identities=9% Similarity=-0.064 Sum_probs=61.1 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCcc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPRQ 80 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r~ 80 (159) +.+.|...++.+.+++.+++.+++..+...+...+ -+.-+.+++.|.+....++.++.|.++..-=....+|+... T Consensus 23 l~~~l~~~~~~~~~~~~~~l~~~a~~v~~~ak~~a----PvdTG~L~~SI~~~~~~~g~~~~V~~~~~YA~~vE~GT~~~ 98 (149) T protein:vir:10 23 MVVELDKFDKKIEEWVKKGIAKTTTKIYNTAVALA----PVDLGFLEESIDFKYFDGGLSSVISVGADYAIYVEYGTGIY 98 (149) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CcccchhhccceEEecCCcEEEEEecCCCcccccccCcccc Confidence 77777777888888888888888887777664443 44567899988877655666777776544333445565222 Q ss_pred ccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 81 TVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFE 149 (159) Q Consensus 81 ~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~ 149 (159) ...+........+ |.-... .+.|.+ .|-+.+ ...+..-.++....|.+.|- T Consensus 99 ~~~~~~~~~~~~~--~~~~~~---~~~~~~------------t~g~~a-~PFl~pA~~~~k~~i~~~i~ 149 (149) T protein:vir:10 99 ATGPGGSRATKIP--WSFKGD---DGEWYT------------TYGQAP-QPFWNPAIDAGRKTFEQYFS 149 (149) T ss_pred ccCCccccccccc--ceeecc---ccceec------------CCCCCC-CcchhHHHHHHHHHHHHhhC Confidence 1111000000011 110011 112221 122222 22222222222222222222 No 17 >protein:vir:5978 Length: 144 # NCBI annotation: hypothetical protein # Family: family:all:180 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690678;genbank:geneid:6329146;genbank:gi:22855072;interpro:IPR011693;uniprot:O48447;genbank:GeneID:955318 Probab=88.90 E-value=0.022 Score=29.68 Aligned_cols=129 Identities=16% Similarity=0.121 Sum_probs=64.1 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCcc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPRQ 80 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r~ 80 (159) +++.|+.+++.+.+++.+|+.+++..+...+.. ..-+.-+.+++.|......++.++.|.++..--+...+|+... T Consensus 16 l~~~l~~~~~~~~~~v~~~l~~~a~~i~~~ak~----~apv~TG~Lr~SI~~~~~~~g~~~~V~~~~~YA~~vE~GT~~~ 91 (144) T protein:vir:59 16 MSRNVRTFSGHVLTQVEQVIIKTAEKIAGLAAS----LAPVDEGNLKNSIQIDYKNNGLTAEITVGAEYAIYVEYGTGIY 91 (144) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCccchhhhcCeeEEeecCcEEEEEecCCCccchhhcCcccc Confidence 777788888888888888888888776665543 3345678899998876655667788877654334455665322 Q ss_pred ccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|NC_010342. 81 TVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVLS 157 (159) Q Consensus 81 ~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L~ 157 (159) ...+ .+++. +..+... ..| .-++.| -+ +....+....++.. +.+..+|+.+.. T Consensus 92 ~~~~--~~~~~-~~~~~~~-~~g-~~~~t~--------------g~-~a~Pfl~pA~~~~~----~~~~~~i~~~~g 144 (144) T protein:vir:59 92 AVDG--NGRKT-PWTYYSP-KLG-RYVRTQ--------------GA-PAQPFFWPAVEEGG----EYFEREMRRLRG 144 (144) T ss_pred ccCC--Ccccc-ccccccc-ccc-ceecCC--------------CC-CCCcchhHHHHHHH----HHHHHHHHHhcC Confidence 1110 01111 0001100 011 111111 11 11122222122222 333334444444 No 18 >protein:vir:107099 Length: 137 # NCBI annotation: conserved phage protein # Family: family:all:180 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950610;genbank:gi:119953690;genbank:GeneID:4643108 Probab=88.85 E-value=0.0089 Score=31.82 Aligned_cols=127 Identities=9% Similarity=-0.008 Sum_probs=62.5 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCcc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPRQ 80 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r~ 80 (159) +.+.|...++.+..++.+||++++..+...+...+. +.-+.+++.|.+....++.++.|.++..-=....+|+... T Consensus 11 l~~~l~~~~~~~~~~~~~al~~~a~~i~~~ak~~aP----vdTG~Lr~SI~~~~~~~~~~~~V~~~~~Ya~~vE~GT~~~ 86 (137) T protein:vir:10 11 LVKELEDFEKETIRWAKKGIAKTTTIIHNSIVSNMP----VDTGYLRESVSMDFKKGGLTGVINIGSEYAVYVNYGTGIY 86 (137) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----cCcchhhcCeeEEeeCCcEEEEEecCCCcccccccCcccc Confidence 667778888888888888888888887777665544 4567899999876555666777776544333344564222 Q ss_pred ccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 81 TVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFE 149 (159) Q Consensus 81 ~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~ 149 (159) ...+.. +......+......|.+ .++ +-+. ....+..-.++..+.|.++|- T Consensus 87 ~~~~~~--~~~~~~~~~~~~~~~~~---~~t------------~g~~-a~PFl~pA~~~~~~~i~k~i~ 137 (137) T protein:vir:10 87 AVGPGG--SRAKNIPWCYKDADGHW---HTT------------KGQH-AQPFWEPAIDEGRAFFNKYFS 137 (137) T ss_pred ccCCCc--cccccccceeeccccce---ecc------------CCCC-CCcchhHHHHHHHHHHHHhcC Confidence 111100 00000111111111211 111 1111 112222222233333333333 No 19 >protein:vir:94796 Length: 137 # NCBI annotation: ORF050 # Family: family:all:180 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240540;genbank:gi:66396237;genbank:GeneID:5133576 Probab=88.75 E-value=0.012 Score=31.11 Aligned_cols=127 Identities=7% Similarity=-0.018 Sum_probs=62.8 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCcc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPRQ 80 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r~ 80 (159) +.+.|...++.+.+++.+||.+++..+...+... .-+.-+.+++.|++....++.++.|.++..-=....+|+.-. T Consensus 11 l~~~L~~~~~~~~~~~~~al~~~a~~v~~~ak~~----aPvdTG~Lr~SI~~~~~~~~~~~~V~~~~~YA~~vE~GT~~~ 86 (137) T protein:vir:94 11 LVKELENYERDIERWVKRGIAKTTVKIHNTIISL----MPVDTGYLRESVTMDFKDGGFTGVINIGSEYAIYVNYGTGIY 86 (137) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCcCcchhhcCceeEeecCcEEEEEecCCCcccccccCcccc Confidence 6777777788888888888888877766655543 345567899999887666667777776543333445664322 Q ss_pred ccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 81 TVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFE 149 (159) Q Consensus 81 ~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~ 149 (159) ...|-. ...-.+.+......|.+ ++.| .. +....+..-.++....|.++|- T Consensus 87 ~~~~~~--~~~~~~~~~~~~~~~~~-~~t~-----------g~----~a~PFl~pA~~~~~~~~~~~l~ 137 (137) T protein:vir:94 87 ATGAGG--SRAKKIPWSYKDANGKW-HTTK-----------GQ----HAQPFWEPAIDAGRVFFNKYFS 137 (137) T ss_pred ccCCCc--ccccccccceeccCCce-eecC-----------Cc----CCCcchHHHHHHHHHHHHHhhC Confidence 111110 00011111111112221 1111 11 1122222223333333333333 No 20 >protein:vir:101594 Length: 173 # NCBI annotation: hypothetical protein # Family: family:all:26502 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112510;genbank:gi:53793610;interpro:IPR010064;uniprot:Q5ZGE3;genbank:GeneID:3101702 Probab=88.55 E-value=0.016 Score=30.38 Aligned_cols=149 Identities=11% Similarity=0.048 Sum_probs=70.4 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCC--cEEEEEEcccccchhhccCC Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIAD--GEVKVWVGLTPLSVHYLGDP 78 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~--~~~~i~~~~~~i~~~~~g~~ 78 (159) +.+.|..+++.+.+++..|+..++..+...+...+.. .-+.+++.|++..-.+. ..+.++.+..--....||+. T Consensus 9 L~~~L~~l~~~~~~~~~~a~~~~a~~i~~~ak~~aPv----~TG~Lr~sI~~~~~~~~~~~~~~v~~~~~Ya~fvEfGT~ 84 (173) T protein:vir:10 9 VIAELRKIGKDIDKNINATTEEAANFIEDRAKTLAPK----NFGKLAQSISTSDLKAKDLISKKITVNELYGAYMEFGTG 84 (173) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc----CchhhhhcceeeeeccCceeEEeeCCCcccchhhhcccc Confidence 7788888888899999999999988888877666543 45689999877643332 33344332222223345653 Q ss_pred cccc--cee----EEeeEEccCceecccCCCCeeEEEEc-CC----cccceeeEeeccccc---hHHHHHHHHHHHHHHH Q lcl|NC_010342. 79 RQTV--TGV----RVGRKNYDSAFVNPMRSRQVMVWRRE-GR----ERLPIERVTEEIAEL---GEAVVRRWERRVEARF 144 (159) Q Consensus 79 r~~~--~gv----~~g~~~~~gaFia~~~~g~~~Vf~R~-gk----~R~PI~~~~ip~~~~---~~~v~~~~~~~~~~~~ 144 (159) +... .+. .-+.......|.....+-| ...+. |- ...-+.....|-+.+ .-..++...+++.+.+ T Consensus 85 ~m~a~P~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~G~~aqPFl~PA~~~~~~~~~~~i 162 (173) T protein:vir:10 85 AKVSVPKEFADMAASFKGQKTGSFKDGLESIK--AWCRAKGIDEKAAYPIFAKILGAGINPQPFLYPAWIEGKKQYLKDL 162 (173) T ss_pred cccCCCchhhhhhccccccccccccccccccc--ccccccccchhcccceeeEeecCCCCCCccchhHHHHhHHHHHHHH Confidence 3211 110 0000000001111000000 00000 00 000111222232221 3344555555666666 Q ss_pred HHHHHHHHHHH Q lcl|NC_010342. 145 IELFEQEARYV 155 (159) Q Consensus 145 ~~~l~~Ei~~~ 155 (159) ...|..||..+ T Consensus 163 ~~~i~~~lrk~ 173 (173) T protein:vir:10 163 ENLLKTYNKKI 173 (173) T ss_pred HHHHHHHhhcC Confidence 66666666665 No 21 >protein:vir:1891 Length: 179 # NCBI annotation: gp10 # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037671;genbank:gi:9634129;genbank:GeneID:1262520 Probab=87.93 E-value=0.036 Score=28.53 Aligned_cols=144 Identities=15% Similarity=0.098 Sum_probs=73.2 Q ss_pred ChHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHheeeecC----CCcE--EEEEEcccccch Q lcl|NC_010342. 1 MPELINATKKQL-DTAVNRALRGAGQWLRTHSVRELGREL-GIVQRPLRQRFRMYSRI----ADGE--VKVWVGLTPLSV 72 (159) Q Consensus 1 i~~~l~~~~~~~-~~A~~rAlnrt~~~~~t~~~r~v~~~~-~ik~k~vr~~~~~~~a~----~~~~--~~i~~~~~~i~~ 72 (159) |.+.|..+++.+ .+++..||..++.-++.++...+...- ......+++.+.+.... ...+ ..+.+.++..+. T Consensus 15 L~~~l~~L~~~~~~k~~r~Al~~aa~~v~~~ak~~ap~~~~~~~~~~l~~~i~~~~~~~~~~~~g~~~~~vgv~~~~~~~ 94 (179) T protein:vir:18 15 LLGKMEAVSEVTRNKAGRFALRKAANIIRDRARSNASRVDDPLTKEAIHKNIVASFSSKQFRRTGDLAFRVGVMGGARQY 94 (179) T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhhhhhheeecccccccccccceeEeeecccccccc Confidence 777788888777 568899999998877777766554322 23346677777654321 1222 222222211111 Q ss_pred hhccC-Cccccce---eEEeeEEcc--CceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 73 HYLGD-PRQTVTG---VRVGRKNYD--SAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIE 146 (159) Q Consensus 73 ~~~g~-~r~~~~g---v~~g~~~~~--gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~ 146 (159) ..... ......+ +..|....+ .+|. |+ |.=-|.+..| .=|. ....++.-.+++.+.|.. T Consensus 95 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y-------~~-fvEfGT~kmp----a~PF---lrPA~~~~~~~a~~~i~~ 159 (179) T protein:vir:18 95 ANTKANVRKGRAGKTYKTSGDKGNPGGDTWY-------WR-FLEFGTEHTS----ARPI---LRPAMNGVDNDVINVFST 159 (179) T ss_pred cccccccccCcccccccccccccCCCCccce-------eE-EeccCCCCCC----CCcc---chhhHHhhHHHHHHHHHH Confidence 11100 0111111 111111111 1122 11 1112333211 1122 345567777788888999 Q ss_pred HHHHHHHHHhccC Q lcl|NC_010342. 147 LFEQEARYVLSSA 159 (159) Q Consensus 147 ~l~~Ei~~~L~~a 159 (159) .|.+||+..|+++ T Consensus 160 ~l~~~i~k~lk~~ 172 (179) T protein:vir:18 160 EMGKAIDRAIRLA 172 (179) T ss_pred HHHHHHHHHHHhh Confidence 9999999999999 No 22 >protein:vir:95894 Length: 137 # NCBI annotation: ORF046 # Family: family:all:180 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240389;genbank:gi:66396083;genbank:GeneID:5133405 Probab=87.68 E-value=0.017 Score=30.31 Aligned_cols=127 Identities=8% Similarity=-0.021 Sum_probs=62.1 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCcc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPRQ 80 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r~ 80 (159) +.+.|...++.+.+++.+|+.+++..+...+... .-+.-+.+++.++.....++.++.|.++..-=+...+|+.-. T Consensus 11 l~~~l~~~~~~~~~~~~~~~~~~a~~v~~~ak~~----aPv~TG~L~~Si~~~~~~~~~~~~V~~~~~YA~~vE~GT~~~ 86 (137) T protein:vir:95 11 LVKELENYERDMERWVKRGIAKTTAKIHNTIISL----MPVDTGYLRESVTMDFKDGGFTGVINIGSEYAIYVNYGTGIY 86 (137) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCccchhhhcCeeeEeeCCceEEEEecCCCcccccccCcccc Confidence 6677777788888888888888877666665443 445567899998876656666777776544333445565322 Q ss_pred ccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 81 TVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFE 149 (159) Q Consensus 81 ~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~ 149 (159) ...|-. .+.-.+.+......|.++ +.| -| +....+..-.++....|.++|- T Consensus 87 ~~~~~~--~~~~~~~~~~~~~~~~~~-~t~--------------g~-~a~PFl~pA~~~~~~~i~k~l~ 137 (137) T protein:vir:95 87 ATGAGG--SRAKKIPWSYKDANGKWH-TTK--------------GQ-HAQPFWEPAIDAGRAFFNKYFS 137 (137) T ss_pred ccCCCc--ccccccccceeccCccee-ecC--------------CC-CCCcchHHHHHHHHHHHHHhhC Confidence 221111 011111121112222222 111 11 1112222222233333333333 No 23 >protein:vir:96121 Length: 137 # NCBI annotation: ORF040 # Family: family:all:180 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240082;genbank:gi:66395767;genbank:GeneID:5133101 Probab=86.84 E-value=0.017 Score=30.22 Aligned_cols=127 Identities=6% Similarity=-0.064 Sum_probs=63.3 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCcc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPRQ 80 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r~ 80 (159) +.+.|+..++.+..++.++|.+++..+...+...+ -+.-+.+++.+.+....++.++.|.++..-=+...+|+.-. T Consensus 11 l~~~l~~~~~~~~~~~~~~l~~~a~~~~~~ak~~~----pvdTG~L~~Si~~~~~~~g~~~~V~~~~~YA~yvE~GT~~~ 86 (137) T protein:vir:96 11 LVAELEDYRDEMEEWVKKGILKTTLAIYNTAVALA----PVDLGFLKESIDFKVTDGGFSSVISVGAEYAIYVEFGTGIY 86 (137) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CcCccchhcCceeEeecCceEEEEecCCCcccccccCcccc Confidence 66778888888888888888888887777665544 34567899988877666777777776544333445565322 Q ss_pred ccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 81 TVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFE 149 (159) Q Consensus 81 ~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~ 149 (159) ...+-....... .+.-....|.+ +++ |-+.+ ...+....++....|.+.|- T Consensus 87 ~~~~~~~~~~~~--~~~~~~~~~~~-~~t--------------~g~~a-~pFl~pA~~~~~~~i~k~i~ 137 (137) T protein:vir:96 87 ATGPGGSRARKL--PWTYKGDDGEW-HTT--------------YGQQA-QPFWNPAIDEGRKVFNRYFS 137 (137) T ss_pred ccCCCccccccc--cceeeccCcce-eec--------------CCCCC-CcchhHHHHHHHHHHHHhhC Confidence 211100000000 01001111211 111 11111 22222222333333333333 No 24 >protein:vir:94538 Length: 125 # NCBI annotation: putative head to tail joining # Family: family:all:180 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223893;genbank:gi:62327105;genbank:GeneID:5075554 Probab=86.83 E-value=0.027 Score=29.18 Aligned_cols=108 Identities=8% Similarity=-0.016 Sum_probs=54.6 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeec---CCCcEEEEEEcccccchhhccC Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSR---IADGEVKVWVGLTPLSVHYLGD 77 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a---~~~~~~~i~~~~~~i~~~~~g~ 77 (159) +.+.|..+++.+..++..|+..++..+...+.... .+.-+.+++.|+.... ..+.++.|.++..- T Consensus 15 l~~~L~~~~~~~~~~v~~al~~~a~~i~~~ak~~a----p~~tG~L~~sI~~~~~~~~~~~~~~~v~~~~~Y-------- 82 (125) T protein:vir:94 15 LLDEFDISRKELVPYSVEAMKTSLSRAVEKSKGLA----RVDTGYMRNNIQQDEVKEEHGVVTGRYVARADY-------- 82 (125) T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhC----CCCChhhhhhceecceeccCCcEEEEeeCCCCc-------- Confidence 67777777778788888888887777666654333 3445567777654322 12222222221110 Q ss_pred CccccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|NC_010342. 78 PRQTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVLS 157 (159) Q Consensus 78 ~r~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L~ 157 (159) .-|+ =-|.+..|= =|.+-| ..++....|.+.|+.+|+..+. T Consensus 83 ----------------a~~v------------EfGT~~~~a----~Pfl~p-------a~~~~~~~~~~~l~~~l~~a~k 123 (125) T protein:vir:94 83 ----------------SSYN------------EYGTYRMSA----QPFMAP-------SVAAMTPFFYKAVRDALNKAAK 123 (125) T ss_pred ----------------ccee------------ecccccCCC----Ccccch-------hHHHHHHHHHHHHHHHHHHHhc Confidence 1121 112221111 122222 2234455566666666677777 Q ss_pred cC Q lcl|NC_010342. 158 SA 159 (159) Q Consensus 158 ~a 159 (159) .| T Consensus 124 ~~ 125 (125) T protein:vir:94 124 FS 125 (125) T ss_pred cC Confidence 77 No 25 >protein:vir:93738 Length: 137 # NCBI annotation: ORF041 # Family: family:all:180 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240463;genbank:gi:66396153;genbank:GeneID:5133507 Probab=86.38 E-value=0.031 Score=28.82 Aligned_cols=127 Identities=8% Similarity=-0.005 Sum_probs=60.9 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCcc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPRQ 80 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r~ 80 (159) +.+.|+..++.+.+++..++.+++..+...+.. ..-+.-+.+++.+......++.++.|.++..-=+...+|+.-. T Consensus 11 l~~~l~~~~~~~~~~~~~~~~~~a~~i~~~ak~----~aPvdTG~Lr~SI~~~~~~~~~~~~V~~~~~YA~~vE~GT~~~ 86 (137) T protein:vir:93 11 LVKELENYERDMERWVKRGIAKTTAKIHNTIIS----LMPVDTGYLRESVTMDFKDSGFTGVINIGSEYAIYVNYGTGIY 86 (137) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCccccchhccceeEeecCceEEEEecCCCcccccccCcccc Confidence 666777777778788777777777766665544 3445667899998877666666777766543333445564222 Q ss_pred ccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 81 TVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFE 149 (159) Q Consensus 81 ~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~ 149 (159) ...+-. ...-.+.|.....+|.++ +.| .. +....+....++....|.++|- T Consensus 87 ~~~~~~--~~~~~~~~~~~~~~~~~~-~t~-----------g~----~a~PFl~pA~~~~~~~~~~~l~ 137 (137) T protein:vir:93 87 ATGAGG--SRAKKIPWSYKDANGKWH-TTK-----------GQ----HAQPFWEPAIDAGRAFFNKYFS 137 (137) T ss_pred ccCCCc--ccccccccceeccCccee-ecC-----------CC----CCCcchHHHHHHHHHHHHHhhC Confidence 111100 000111111111122211 111 11 1122222222333333333333 No 26 >protein:vir:97427 Length: 137 # NCBI annotation: ORF043 # Family: family:all:180 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240753;genbank:gi:66396447;genbank:GeneID:5133783 Probab=86.38 E-value=0.031 Score=28.82 Aligned_cols=127 Identities=8% Similarity=-0.005 Sum_probs=60.9 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCcc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPRQ 80 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r~ 80 (159) +.+.|+..++.+.+++..++.+++..+...+.. ..-+.-+.+++.+......++.++.|.++..-=+...+|+.-. T Consensus 11 l~~~l~~~~~~~~~~~~~~~~~~a~~i~~~ak~----~aPvdTG~Lr~SI~~~~~~~~~~~~V~~~~~YA~~vE~GT~~~ 86 (137) T protein:vir:97 11 LVKELENYERDMERWVKRGIAKTTAKIHNTIIS----LMPVDTGYLRESVTMDFKDSGFTGVINIGSEYAIYVNYGTGIY 86 (137) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCccccchhccceeEeecCceEEEEecCCCcccccccCcccc Confidence 666777777778788777777777766665544 3445667899998877666666777766543333445564222 Q ss_pred ccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 81 TVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFE 149 (159) Q Consensus 81 ~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~ 149 (159) ...+-. ...-.+.|.....+|.++ +.| .. +....+....++....|.++|- T Consensus 87 ~~~~~~--~~~~~~~~~~~~~~~~~~-~t~-----------g~----~a~PFl~pA~~~~~~~~~~~l~ 137 (137) T protein:vir:97 87 ATGAGG--SRAKKIPWSYKDANGKWH-TTK-----------GQ----HAQPFWEPAIDAGRAFFNKYFS 137 (137) T ss_pred ccCCCc--ccccccccceeccCccee-ecC-----------CC----CCCcchHHHHHHHHHHHHHhhC Confidence 111100 000111111111122211 111 11 1122222222333333333333 No 27 >protein:vir:94490 Length: 137 # NCBI annotation: ORF043 # Family: family:all:180 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240680;genbank:gi:66396374;genbank:GeneID:5133754 Probab=86.38 E-value=0.031 Score=28.82 Aligned_cols=127 Identities=8% Similarity=-0.005 Sum_probs=60.9 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCcc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPRQ 80 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r~ 80 (159) +.+.|+..++.+.+++..++.+++..+...+.. ..-+.-+.+++.+......++.++.|.++..-=+...+|+.-. T Consensus 11 l~~~l~~~~~~~~~~~~~~~~~~a~~i~~~ak~----~aPvdTG~Lr~SI~~~~~~~~~~~~V~~~~~YA~~vE~GT~~~ 86 (137) T protein:vir:94 11 LVKELENYERDMERWVKRGIAKTTAKIHNTIIS----LMPVDTGYLRESVTMDFKDSGFTGVINIGSEYAIYVNYGTGIY 86 (137) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCccccchhccceeEeecCceEEEEecCCCcccccccCcccc Confidence 666777777778788777777777766665544 3445667899998877666666777766543333445564222 Q ss_pred ccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 81 TVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFE 149 (159) Q Consensus 81 ~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~ 149 (159) ...+-. ...-.+.|.....+|.++ +.| .. +....+....++....|.++|- T Consensus 87 ~~~~~~--~~~~~~~~~~~~~~~~~~-~t~-----------g~----~a~PFl~pA~~~~~~~~~~~l~ 137 (137) T protein:vir:94 87 ATGAGG--SRAKKIPWSYKDANGKWH-TTK-----------GQ----HAQPFWEPAIDAGRAFFNKYFS 137 (137) T ss_pred ccCCCc--ccccccccceeccCccee-ecC-----------CC----CCCcchHHHHHHHHHHHHHhhC Confidence 111100 000111111111122211 111 11 1122222222333333333333 No 28 >protein:vir:97088 Length: 157 # NCBI annotation: hypothetical protein # Family: family:all:2714 # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453568;genbank:gi:84662603;genbank:GeneID:5142503 Probab=85.35 E-value=0.053 Score=27.56 Aligned_cols=136 Identities=7% Similarity=-0.082 Sum_probs=76.5 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecC---CCcE--EEEEEcccccchhh- Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRI---ADGE--VKVWVGLTPLSVHY- 74 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~---~~~~--~~i~~~~~~i~~~~- 74 (159) +.+.|+.+++...++++.|+.+.+.-++.++...+. .+.+.+++.|.+.... .++. +.|..+....+.-+ T Consensus 13 l~~~l~~l~~~~~~v~R~A~~~ga~vv~dear~~aP----~~tG~LkksI~~~~~~~~s~~g~~~~~Vg~~~~~a~~g~~ 88 (157) T protein:vir:97 13 ILAGLETVVEHSSDVVRTMTYESAVAVRESAKAFVN----DETGKLRNNLYVAYSPEESVEGIQTYAVSWRKKAAPHGHL 88 (157) T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCcchhhhheeeeeccccCCCceEEEEEeecCCccceeee Confidence 666777777777888888888888777777665553 4678899999775322 1222 33444333332222 Q ss_pred --ccCCccccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 75 --LGDPRQTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEA 152 (159) Q Consensus 75 --~g~~r~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei 152 (159) ||... ... ....=.|+|+.... +.|.. ..+|-.+=.-..++...+++.+.+..+|.++| T Consensus 89 vEfG~~~-~~~----~~~~~~~~~~~~~~--------~~~t~------~~~Pa~PFlRPA~d~~k~~a~~~~~~~l~k~I 149 (157) T protein:vir:97 89 LEFGHWQ-THA----AYRDKDGQWYSSKV--------KLVNP------KWIPAKPFLRPGYDSVAMQIPDIARAAGAKKY 149 (157) T ss_pred eecCccc-ccc----cccCCccccccccc--------ccCCC------CcCCCCcccchHHHHhHHHHHHHHHHHHHHHH Confidence 23111 000 01111233332211 11111 12332222446677778888888889999999 Q ss_pred HHHhccC Q lcl|NC_010342. 153 RYVLSSA 159 (159) Q Consensus 153 ~~~L~~a 159 (159) .-.|+|- T Consensus 150 ~e~l~g~ 156 (157) T protein:vir:97 150 AELQRGD 156 (157) T ss_pred HHHhcCC Confidence 9999999 No 29 >protein:vir:95789 Length: 114 # NCBI annotation: hypothetical protein # Family: family:all:180 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950593;genbank:gi:119953788;genbank:GeneID:5076859 Probab=85.19 E-value=0.027 Score=29.17 Aligned_cols=104 Identities=8% Similarity=0.032 Sum_probs=50.7 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCcc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPRQ 80 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r~ 80 (159) +.+.|....+.+...+.+||..++..+..++...+. +.-+.+++.|++.. ++.++.|.++. T Consensus 11 l~~~l~~~~~~~~~~v~~al~~~a~~i~~~ak~~aP----v~TG~Lr~sI~~~~--~g~~~~V~~~~------------- 71 (114) T protein:vir:95 11 LVATISNAQPKAVEQSLQVLKNNGEKGKRIAKQLAP----KDTEFLKDHITTSY--PGMEAHIHGEA------------- 71 (114) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----cCchhhhhceeeec--CceEEEeecCC------------- Confidence 777777777888888888888888877666555443 33445666554322 12222222211 Q ss_pred ccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|NC_010342. 81 TVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVLS 157 (159) Q Consensus 81 ~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L~ 157 (159) .-+.|+- .|+ +. .| ....+.-..++..+.|.+.|..+|+..|+ T Consensus 72 -----------~Ya~yvE---~GT---------~~-------~~----aqPfl~pa~~~~~~~~~~~l~~~l~~~~k 114 (114) T protein:vir:95 72 -----------GYDGYQE---YGT---------RF-------QP----GTPHFRPMMEQIQPQFQKDMTDVMKGAFK 114 (114) T ss_pred -----------Cccceee---cCc---------cc-------cC----CCccchhhHHHHHHHHHHHHHHHHHhhcC Confidence 1122321 122 11 11 11222222233444555555555555555 No 30 >protein:vir:96829 Length: 135 # NCBI annotation: ORF033 # Family: family:all:180 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240161;genbank:gi:66395838;genbank:GeneID:5133170 Probab=84.09 E-value=0.055 Score=27.47 Aligned_cols=125 Identities=9% Similarity=-0.039 Sum_probs=61.9 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCcc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPRQ 80 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r~ 80 (159) +.+.|...++.+.+++.+|+..++..+...+.. ..-+.-+.+++.|......++.++.|.++..--+...+|+... T Consensus 11 l~~~l~~~~~~~~~~~~~al~~~a~~v~~~ak~----~apvdTG~Lr~SI~~~~~~~g~~~~V~~~~~YA~~ve~GT~~~ 86 (135) T protein:vir:96 11 IVVDLEKYSKDMEKWVKKGITKTTLKIYNTAIH----LMPVDTGFLRQSTTVDFENGGFTGVVKIGSNYAVYVNYGTGIY 86 (135) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCccchhhhcceeEEeecCcEEEEEecCCCccchhhcccccc Confidence 667777778888888888888877776665533 3345678899998876655666777766554334445665322 Q ss_pred ccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 81 TVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFE 149 (159) Q Consensus 81 ~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~ 149 (159) ...+- .|+ .++ |....++|. -++. |-+.+ ...+....++.++.|.+.|. T Consensus 87 ~~~~~-~~~-~~~--~~~~~~~g~-~~~~--------------~~~~a-~pfl~~A~~~~~~~~~~~i~ 135 (135) T protein:vir:96 87 ATKGS-RAH-KIP--WTYKDPNGK-WHTT--------------YGQMP-QPFWEPAIDAGRQTFEQYFS 135 (135) T ss_pred cCCCc-ccc-ccc--cccccCCcc-eeec--------------CCcCC-CcchhHHHHHHHHHHHHhcC Confidence 11110 011 111 111111111 1111 11111 22222222333333444443 No 31 >protein:vir:105089 Length: 133 # NCBI annotation: Gp11 # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006591;genbank:gi:46402097;genbank:GeneID:2777955 Probab=82.94 E-value=0.073 Score=26.83 Aligned_cols=119 Identities=13% Similarity=0.112 Sum_probs=54.7 Q ss_pred ChHHHhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecC--CCcEEEEEEcccccchhhccC Q lcl|NC_010342. 1 MPELINATKKQLD-TAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRI--ADGEVKVWVGLTPLSVHYLGD 77 (159) Q Consensus 1 i~~~l~~~~~~~~-~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~--~~~~~~i~~~~~~i~~~~~g~ 77 (159) +.+.|...+..+. ++...||..++.-+...+...+....+-..+.++..+.+.... ....+.+. T Consensus 12 l~~~l~~L~~~~~~k~~~~Al~~~a~~i~~~ak~~ap~~~~~~~~~~~~~I~v~~~~~~~~~~~~~~------------- 78 (133) T protein:vir:10 12 LERQLTALGEKVATKVLRDAGREALKVVEEDMKQHAGFDETSTGQHMRDSIKIRSSTRKAQGNAVVT------------- 78 (133) T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhhhhhcccccccccccCccceEE------------- Confidence 6666777766664 5667888888877776666655433333233444444432111 11111111 Q ss_pred CccccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 78 PRQTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYV 155 (159) Q Consensus 78 ~r~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~ 155 (159) +.+|... +..| ...|.=-|.+..| .=|. ....++...+++.+.|.+.|.++|+.. T Consensus 79 -------v~vg~~~-~~~~--------y~~f~E~GT~k~~----a~PF---~~pA~~~~~~~~~~~~~~~~~~~l~K~ 133 (133) T protein:vir:10 79 -------LRVGPSK-QHHM--------KVLAQEFGTVKQV----ADPF---IRPALDYNVQTVLRVLTVEIRNGIQNR 133 (133) T ss_pred -------EEecCCC-Cccc--------eEeeeccCCCCCC----CCcc---chHHHHHhHHHHHHHHHHHHHHHhhcC Confidence 1222100 0001 1234444554433 1122 344445555555555555555555555 No 32 >protein:vir:9930 Length: 108 # NCBI annotation: hypothetical protein # Family: family:all:180 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795692;genbank:gi:28876456;genbank:GeneID:1257995 Probab=81.70 E-value=0.036 Score=28.47 Aligned_cols=102 Identities=10% Similarity=0.061 Sum_probs=47.6 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCcc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPRQ 80 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r~ 80 (159) +.+.|...++.+..++..||..++..+...+...+ -+.-+.+++.+++... ++..+.|..+..=-++.-||+ T Consensus 7 l~~~l~~~~~~~~~~v~~al~~~a~~i~~~ak~~a----Pv~TG~Lr~sI~~~~~-~~~~~~v~~~~~Ya~~vE~GT--- 78 (108) T protein:vir:99 7 FLRSVERKQKSVRIAVDKELSKSAARIERQAKILA----PVDTGWLRAQIYSEQQ-RLLHYRVVSPALYSIYLELGT--- 78 (108) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CcCchhhhcceeeeec-CcEEEEeecCcccchhcccCc--- Confidence 77777777888888888888888877766554433 3445567777665542 223333332211111111221 Q ss_pred ccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc Q lcl|NC_010342. 81 TVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVLSS 158 (159) Q Consensus 81 ~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L~~ 158 (159) +..|= =|.+. ..++. .... |..+|..+|.+ T Consensus 79 ---------------------------------~~m~a----~Pf~~---pa~~~----~~~~----~~~~i~~~lrk 108 (108) T protein:vir:99 79 ---------------------------------RKMEA----QSFLD---PALRK----EWPV----LMANIKKMFKR 108 (108) T ss_pred ---------------------------------cccCC----Ccchh---hhHHH----HHHH----HHHHHHHHhcC Confidence 11000 02222 22222 2222 33333333333 No 33 >protein:vir:97144 Length: 115 # NCBI annotation: ORF047 # Family: family:all:180 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239729;genbank:gi:66394911;genbank:GeneID:5130877 Probab=79.22 E-value=0.096 Score=26.16 Aligned_cols=105 Identities=12% Similarity=0.104 Sum_probs=51.5 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHheeeecCCCcEEEEEEcccccchhhccCC Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIV--QRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDP 78 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik--~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~ 78 (159) +.+.|...++.+..++..|+.+.+..+..++.+.....+..| -+.+++.|.+.+. ++.++.|..+.. T Consensus 9 l~~~l~~~~~~~~~~v~~a~~~~~~~i~~~a~~~a~~~~~~p~~TG~Lr~sI~~~~~-g~~~~~v~~~~~---------- 77 (115) T protein:vir:97 9 LLNQFHDMKTNIDDDVDDILQENAKEYVVRAKLKAREVMNKGYWTGNLSRNIRYKKT-GDLQYTITSHAA---------- 77 (115) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhhhhcceeeec-CceEEEeecCcc---------- Confidence 777777778889999999999999888888777665555443 3456666654431 222332222111 Q ss_pred ccccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|NC_010342. 79 RQTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVLS 157 (159) Q Consensus 79 r~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L~ 157 (159) -..|+ =-|.+..| .=|.+ ...++...+ .+.++|+..++ T Consensus 78 --------------Ya~~v------------E~GT~km~----a~Pfl---~PA~~~~~~--------~~~~~i~~~~k 115 (115) T protein:vir:97 78 --------------YSGFL------------EFGTRYME----AEPFM---WPVYEVIRK--------STVEELKALFE 115 (115) T ss_pred --------------chhhh------------cccccccC----CCCch---hhhHHHHHH--------HHHHHHHHHhC Confidence 11121 11122111 11222 222232222 22333333333 No 34 >protein:vir:96225 Length: 115 # NCBI annotation: ORF040 # Family: family:all:180 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239574;genbank:gi:66395330;genbank:GeneID:5132773 Probab=79.22 E-value=0.096 Score=26.16 Aligned_cols=105 Identities=12% Similarity=0.104 Sum_probs=51.5 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHheeeecCCCcEEEEEEcccccchhhccCC Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIV--QRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDP 78 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik--~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~ 78 (159) +.+.|...++.+..++..|+.+.+..+..++.+.....+..| -+.+++.|.+.+. ++.++.|..+.. T Consensus 9 l~~~l~~~~~~~~~~v~~a~~~~~~~i~~~a~~~a~~~~~~p~~TG~Lr~sI~~~~~-g~~~~~v~~~~~---------- 77 (115) T protein:vir:96 9 LLNQFHDMKTNIDDDVDDILQENAKEYVVRAKLKAREVMNKGYWTGNLSRNIRYKKT-GDLQYTITSHAA---------- 77 (115) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhhhhcceeeec-CceEEEeecCcc---------- Confidence 777777778889999999999999888888777665555443 3456666654431 222332222111 Q ss_pred ccccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|NC_010342. 79 RQTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVLS 157 (159) Q Consensus 79 r~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L~ 157 (159) -..|+ =-|.+..| .=|.+ ...++...+ .+.++|+..++ T Consensus 78 --------------Ya~~v------------E~GT~km~----a~Pfl---~PA~~~~~~--------~~~~~i~~~~k 115 (115) T protein:vir:96 78 --------------YSGFL------------EFGTRYME----AEPFM---WPVYEVIRK--------STVEELKALFE 115 (115) T ss_pred --------------chhhh------------cccccccC----CCCch---hhhHHHHHH--------HHHHHHHHHhC Confidence 11121 11122111 11222 222232222 22333333333 No 35 >protein:vir:78858 Length: 115 # NCBI annotation: hypothetical protein # Family: family:all:180 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285365;genbank:gi:148717893;genbank:GeneID:5246989 Probab=79.22 E-value=0.096 Score=26.16 Aligned_cols=105 Identities=12% Similarity=0.104 Sum_probs=51.5 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHheeeecCCCcEEEEEEcccccchhhccCC Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIV--QRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDP 78 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik--~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~ 78 (159) +.+.|...++.+..++..|+.+.+..+..++.+.....+..| -+.+++.|.+.+. ++.++.|..+.. T Consensus 9 l~~~l~~~~~~~~~~v~~a~~~~~~~i~~~a~~~a~~~~~~p~~TG~Lr~sI~~~~~-g~~~~~v~~~~~---------- 77 (115) T protein:vir:78 9 LLNQFHDMKTNIDDDVDDILQENAKEYVVRAKLKAREVMNKGYWTGNLSRNIRYKKT-GDLQYTITSHAA---------- 77 (115) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhhhhcceeeec-CceEEEeecCcc---------- Confidence 777777778889999999999999888888777665555443 3456666654431 222332222111 Q ss_pred ccccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|NC_010342. 79 RQTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVLS 157 (159) Q Consensus 79 r~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L~ 157 (159) -..|+ =-|.+..| .=|.+ ...++...+ .+.++|+..++ T Consensus 78 --------------Ya~~v------------E~GT~km~----a~Pfl---~PA~~~~~~--------~~~~~i~~~~k 115 (115) T protein:vir:78 78 --------------YSGFL------------EFGTRYME----AEPFM---WPVYEVIRK--------STVEELKALFE 115 (115) T ss_pred --------------chhhh------------cccccccC----CCCch---hhhHHHHHH--------HHHHHHHHHhC Confidence 11121 11122111 11222 222232222 22333333333 No 36 >protein:vir:96358 Length: 115 # NCBI annotation: ORF045 # Family: family:all:180 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239651;genbank:gi:66395408;genbank:GeneID:5132834 Probab=79.22 E-value=0.096 Score=26.16 Aligned_cols=105 Identities=12% Similarity=0.104 Sum_probs=51.5 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHheeeecCCCcEEEEEEcccccchhhccCC Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIV--QRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDP 78 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik--~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~ 78 (159) +.+.|...++.+..++..|+.+.+..+..++.+.....+..| -+.+++.|.+.+. ++.++.|..+.. T Consensus 9 l~~~l~~~~~~~~~~v~~a~~~~~~~i~~~a~~~a~~~~~~p~~TG~Lr~sI~~~~~-g~~~~~v~~~~~---------- 77 (115) T protein:vir:96 9 LLNQFHDMKTNIDDDVDDILQENAKEYVVRAKLKAREVMNKGYWTGNLSRNIRYKKT-GDLQYTITSHAA---------- 77 (115) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhhhhcceeeec-CceEEEeecCcc---------- Confidence 777777778889999999999999888888777665555443 3456666654431 222332222111 Q ss_pred ccccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|NC_010342. 79 RQTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVLS 157 (159) Q Consensus 79 r~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L~ 157 (159) -..|+ =-|.+..| .=|.+ ...++...+ .+.++|+..++ T Consensus 78 --------------Ya~~v------------E~GT~km~----a~Pfl---~PA~~~~~~--------~~~~~i~~~~k 115 (115) T protein:vir:96 78 --------------YSGFL------------EFGTRYME----AEPFM---WPVYEVIRK--------STVEELKALFE 115 (115) T ss_pred --------------chhhh------------cccccccC----CCCch---hhhHHHHHH--------HHHHHHHHHhC Confidence 11121 11122111 11222 222232222 22333333333 No 37 >protein:vir:103917 Length: 115 # NCBI annotation: hypothetical protein # Family: family:all:180 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873996;genbank:gi:118430771;genbank:GeneID:4525409 Probab=79.22 E-value=0.096 Score=26.16 Aligned_cols=105 Identities=12% Similarity=0.104 Sum_probs=51.5 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHheeeecCCCcEEEEEEcccccchhhccCC Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIV--QRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDP 78 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik--~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~ 78 (159) +.+.|...++.+..++..|+.+.+..+..++.+.....+..| -+.+++.|.+.+. ++.++.|..+.. T Consensus 9 l~~~l~~~~~~~~~~v~~a~~~~~~~i~~~a~~~a~~~~~~p~~TG~Lr~sI~~~~~-g~~~~~v~~~~~---------- 77 (115) T protein:vir:10 9 LLNQFHDMKTNIDDDVDDILQENAKEYVVRAKLKAREVMNKGYWTGNLSRNIRYKKT-GDLQYTITSHAA---------- 77 (115) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhhhhcceeeec-CceEEEeecCcc---------- Confidence 777777778889999999999999888888777665555443 3456666654431 222332222111 Q ss_pred ccccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|NC_010342. 79 RQTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVLS 157 (159) Q Consensus 79 r~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L~ 157 (159) -..|+ =-|.+..| .=|.+ ...++...+ .+.++|+..++ T Consensus 78 --------------Ya~~v------------E~GT~km~----a~Pfl---~PA~~~~~~--------~~~~~i~~~~k 115 (115) T protein:vir:10 78 --------------YSGFL------------EFGTRYME----AEPFM---WPVYEVIRK--------STVEELKALFE 115 (115) T ss_pred --------------chhhh------------cccccccC----CCCch---hhhHHHHHH--------HHHHHHHHHhC Confidence 11121 11122111 11222 222232222 22333333333 No 38 >protein:vir:9312 Length: 115 # NCBI annotation: phi Mu50B-like protein # Family: family:all:180 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803290;genbank:gi:29028600;genbank:GeneID:1258048 Probab=79.22 E-value=0.096 Score=26.16 Aligned_cols=105 Identities=12% Similarity=0.104 Sum_probs=51.5 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHheeeecCCCcEEEEEEcccccchhhccCC Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIV--QRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDP 78 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik--~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~ 78 (159) +.+.|...++.+..++..|+.+.+..+..++.+.....+..| -+.+++.|.+.+. ++.++.|..+.. T Consensus 9 l~~~l~~~~~~~~~~v~~a~~~~~~~i~~~a~~~a~~~~~~p~~TG~Lr~sI~~~~~-g~~~~~v~~~~~---------- 77 (115) T protein:vir:93 9 LLNQFHDMKTNIDDDVDDILQENAKEYVVRAKLKAREVMNKGYWTGNLSRNIRYKKT-GDLQYTITSHAA---------- 77 (115) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCchhhhhcceeeec-CceEEEeecCcc---------- Confidence 777777778889999999999999888888777665555443 3456666654431 222332222111 Q ss_pred ccccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|NC_010342. 79 RQTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVLS 157 (159) Q Consensus 79 r~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L~ 157 (159) -..|+ =-|.+..| .=|.+ ...++...+ .+.++|+..++ T Consensus 78 --------------Ya~~v------------E~GT~km~----a~Pfl---~PA~~~~~~--------~~~~~i~~~~k 115 (115) T protein:vir:93 78 --------------YSGFL------------EFGTRYME----AEPFM---WPVYEVIRK--------STVEELKALFE 115 (115) T ss_pred --------------chhhh------------cccccccC----CCCch---hhhHHHHHH--------HHHHHHHHHhC Confidence 11121 11122111 11222 222232222 22333333333 No 39 >protein:vir:1273 Length: 127 # NCBI annotation: hypothetical protein # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690765;genbank:gi:22855005;genbank:GeneID:955232 Probab=77.88 E-value=0.12 Score=25.63 Aligned_cols=114 Identities=13% Similarity=0.161 Sum_probs=51.6 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecC--CCcEEEEEEcccccchhhccCC Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRI--ADGEVKVWVGLTPLSVHYLGDP 78 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~--~~~~~~i~~~~~~i~~~~~g~~ 78 (159) |.+.|...+..++++...||..++.-+...+...+.... -..+.++..|.+.+.. .+....+.+|.+ T Consensus 12 l~~~l~~l~~~~~~~~~~al~~~a~~v~~~~k~~ap~~~-~~tg~l~~~I~~~~~k~~~~g~~~v~Vg~~---------- 80 (127) T protein:vir:12 12 LTQYFEKIGGDIEKVEPVALKAGGEIIAERQRSHVNRSD-KKQPHMQDNITVSNVRESKDGVRFVAVGPN---------- 80 (127) T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CChhHHHHhhhccccccccCceeEEEEeeC---------- Confidence 667777777778888888888888877777765543211 0124555555432211 111222222210 Q ss_pred ccccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 79 RQTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEAR 153 (159) Q Consensus 79 r~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~ 153 (159) + ..+|.+. |.=-|.+..| =..=....++...+++.+.|.+.|..+|+ T Consensus 81 ----------~---~~~~y~~--------f~E~GT~~~~-------a~Pf~~pa~~~~~~~~~~~~~~~~~~~lk 127 (127) T protein:vir:12 81 ----------K---KVAYRGR--------FLEWGTSKMP-------PQPFIEKGGKEGEGPAVELMERILTAPIK 127 (127) T ss_pred ----------C---CCcceee--------eeccCccCCC-------CCccchHhHHHHHHHHHHHHHHHHHHhcC Confidence 0 1123221 1222222211 11113344444444455544444444444 No 40 >protein:vir:79555 Length: 192 # NCBI annotation: putative tail component # Family: family:all:869 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272521;genbank:gi:148609390;genbank:GeneID:5204391 Probab=75.30 E-value=0.15 Score=25.13 Aligned_cols=148 Identities=10% Similarity=0.076 Sum_probs=71.5 Q ss_pred ChH-----HHhhhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhcCcHHHHHHH--heeeecCCCcEEE Q lcl|NC_010342. 1 MPE-----LINATKKQLDTAVNRALRGAGQWLRTHSV-----------RELGRELGIVQRPLRQR--FRMYSRIADGEVK 62 (159) Q Consensus 1 i~~-----~l~~~~~~~~~A~~rAlnrt~~~~~t~~~-----------r~v~~~~~ik~k~vr~~--~~~~~a~~~~~~~ 62 (159) +.. .=.++..++.++..+|+++|+.|+.++++ +.|++...+-...-... .++.-.. ++... T Consensus 11 l~~l~~~~vp~A~~~ainrva~ra~~~t~~~v~~~~~~~~~~~~~I~~k~iR~R~r~~ka~~~~~~~~~I~v~~-~~l~a 89 (192) T protein:vir:79 11 LNSLDTRMVPQASAWAINRVAQKAVSVATRQVAGNTVAGDNQVKGIPLKLVRQRVRVFKASPSGKMTARIRVNR-GNLPA 89 (192) T ss_pred HHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcHHHHHhhhhcccccCCCceEEEEEEec-Cceee Confidence 333 23456777888899999999999999873 34555555533222111 1222111 11111 Q ss_pred EEEccccc-------------chhhccCCccccceeEEe-eEEccCceecccCCC-CeeEEEEcCCcccceeeEeecccc Q lcl|NC_010342. 63 VWVGLTPL-------------SVHYLGDPRQTVTGVRVG-RKNYDSAFVNPMRSR-QVMVWRREGRERLPIERVTEEIAE 127 (159) Q Consensus 63 i~~~~~~i-------------~~~~~g~~r~~~~gv~~g-~~~~~gaFia~~~~g-~~~Vf~R~gk~R~PI~~~~ip~~~ 127 (159) +..|...+ +..+.|. ..-.+|-... +.-..|-|--. +| ...-.. .-+.|| +-|+.. T Consensus 90 i~lg~~r~r~~rr~~~~~~~~s~~~vGk-~~f~gaFia~m~ngr~~V~~R~--~gk~R~PIe---vvkIpi---s~~l~~ 160 (192) T protein:vir:79 90 IKLGTARVRLARRGGKLQYRGSVLKVGK-YLFRDAFIQQLANGRWHVMRRI--DGKNRYPID---VVKIPL---SGPLTQ 160 (192) T ss_pred eeecccccccccccccccccccceEEcc-eecCchhccccCCCCccceEec--CCCccCCee---eEeech---HHHHHH Confidence 11111100 0011111 0111110000 00012223211 11 111111 336777 445554 Q ss_pred ch-HHHHHHHHHHHHHHHHHHHHHHHHHHhcc Q lcl|NC_010342. 128 LG-EAVVRRWERRVEARFIELFEQEARYVLSS 158 (159) Q Consensus 128 ~~-~~v~~~~~~~~~~~~~~~l~~Ei~~~L~~ 158 (159) -. .++.+.+++++++.|...|.+||...|++ T Consensus 161 af~~e~~r~~~~~~~~el~~~L~~qlr~~~~r 192 (192) T protein:vir:79 161 AFEDARDRIIAAEMPKQLGYALKQQLRLWLTR 192 (192) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC Confidence 43 34555667899999999999999999999 No 41 >protein:vir:3427 Length: 192 # NCBI annotation: tail component # Family: family:all:869 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040590;genbank:gi:9626254;genbank:GeneID:2703485 Probab=74.16 E-value=0.074 Score=26.80 Aligned_cols=152 Identities=9% Similarity=0.054 Sum_probs=45.2 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEE-Ecc-cccchhhccCC Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVW-VGL-TPLSVHYLGDP 78 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~-~~~-~~i~~~~~g~~ 78 (159) |+++....+.--+.++-.|..+|...+=..+.....++.. +-..+....=.....++ ... ++-..++.+.. T Consensus 6 l~~~~~~L~~i~~~~vp~A~~rAiNrta~~a~t~~~r~v~-------~e~~I~~k~Ir~r~r~~kAs~~~l~a~I~~~~~ 78 (192) T protein:vir:34 6 LEQAVENLSRISKTAVPGAAAMAINRVASSAISQSASQVA-------RETKVRRKLVKERARLKRATVKNPQARIKVNRG 78 (192) T ss_pred HHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHhCCCHHHHHhhheeccccCCCceEEEEEecc Confidence 3333333333333344444444444443333333333332 11111100000000000 000 00000010000 Q ss_pred -----ccccceeEEeeEEcc-----------CceecccCC-CCeeEEEEcCCcccceee-E----eeccccchHHHHHHH Q lcl|NC_010342. 79 -----RQTVTGVRVGRKNYD-----------SAFVNPMRS-RQVMVWRREGRERLPIER-V----TEEIAELGEAVVRRW 136 (159) Q Consensus 79 -----r~~~~gv~~g~~~~~-----------gaFia~~~~-g~~~Vf~R~gk~R~PI~~-~----~ip~~~~~~~v~~~~ 136 (159) +-....+..+++-.. |.++--++. -..+..++....+..|=. . ..||..-.-.+.+.+ T Consensus 79 ~l~~~~l~~~~~~~~rr~~~~~~~~~~~~~~g~~~k~Gk~~f~gaFia~m~ng~~~Vf~R~~gk~R~PIe~vkIpis~~l 158 (192) T protein:vir:34 79 DLPVIKLGNARVVLSRRRRRKKGQRSSLKGGGSVLVVGNRRIPGAFIQQLKNGRWHVMQRVAGKNRYPIDVVKIPMAVPL 158 (192) T ss_pred ceeeeeecccccccccccccccccccccccccceeeecceecCCcccccCCCCCceeEEEccCCCccceeEEEechhHHH Confidence 000111111111111 111110000 000112223333333311 1 234432222334445 Q ss_pred HHHHHHHHHHHHHHHHHHHhccC Q lcl|NC_010342. 137 ERRVEARFIELFEQEARYVLSSA 159 (159) Q Consensus 137 ~~~~~~~~~~~l~~Ei~~~L~~a 159 (159) .+.+++..++.|+.++.++|+.+ T Consensus 159 ~~af~~~~~~~~~~~~~~El~~~ 181 (192) T protein:vir:34 159 TTAFKQNIERIRRERLPKELGYA 181 (192) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH Confidence 55566666666666666666666 No 42 >protein:vir:105007 Length: 146 # NCBI annotation: conserved phage protein # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459972;genbank:gi:85701387;genbank:GeneID:3882148 Probab=74.09 E-value=0.16 Score=24.91 Aligned_cols=127 Identities=13% Similarity=0.168 Sum_probs=55.2 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecC-CCcEEEEEEcccccchhhccCCc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRI-ADGEVKVWVGLTPLSVHYLGDPR 79 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~-~~~~~~i~~~~~~i~~~~~g~~r 79 (159) +.+.|...+..+.+++..||...+.-+...+...+....+-. ++.+...... .... ..| .+...+ T Consensus 15 l~~~l~~L~~~~~~~~~~al~~ga~~i~~~ak~~ap~~~~~~----~~~~~~~~~~~~~~~-------~~i---~~~~~~ 80 (146) T protein:vir:10 15 LVTELDQMGLRGEKIEDKALAAGGEPIRKAIAERAPRSPSPK----KRSKSEPWRTGQHGA-------DQI---KVTKAK 80 (146) T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc----ccccccccccccccc-------ccc---eecccc Confidence 666677777777777778887777777666666554333221 1111110000 0000 011 111111 Q ss_pred cc--cceeEEeeEE--ccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 80 QT--VTGVRVGRKN--YDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYV 155 (159) Q Consensus 80 ~~--~~gv~~g~~~--~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~ 155 (159) .. ...+.+|-.. -.++|.+.+ .=-|.+..| .-|. ....++...+++.+.|.+.|.++|+.. T Consensus 81 ~~~g~~~~~vg~~~~~~~~~~y~~f--------~E~GT~~~~----a~PF---l~pa~~~~k~~~~~~~~~~l~~~l~ka 145 (146) T protein:vir:10 81 LEGGIKTVKIGLNKADRSPWFYLKF--------HEWGTSKMP----AHPF---IEPGFNASKAEAVRAMTDILKNEMRLD 145 (146) T ss_pred ccccceeEEeeeccCCCCCcceeee--------eccCCCCCC----CCcc---hhHHHHHhHHHHHHHHHHHHHHHHhhc Confidence 11 1223333211 122343322 112333322 1122 234455555566666666666666666 Q ss_pred h Q lcl|NC_010342. 156 L 156 (159) Q Consensus 156 L 156 (159) | T Consensus 146 ~ 146 (146) T protein:vir:10 146 L 146 (146) T ss_pred C Confidence 6 No 43 >protein:vir:102875 Length: 146 # NCBI annotation: conserved phage protein, HK97 gp10 family # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338140;genbank:gi:77020200;genbank:GeneID:3703784 Probab=74.09 E-value=0.16 Score=24.91 Aligned_cols=127 Identities=13% Similarity=0.168 Sum_probs=55.2 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecC-CCcEEEEEEcccccchhhccCCc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRI-ADGEVKVWVGLTPLSVHYLGDPR 79 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~-~~~~~~i~~~~~~i~~~~~g~~r 79 (159) +.+.|...+..+.+++..||...+.-+...+...+....+-. ++.+...... .... ..| .+...+ T Consensus 15 l~~~l~~L~~~~~~~~~~al~~ga~~i~~~ak~~ap~~~~~~----~~~~~~~~~~~~~~~-------~~i---~~~~~~ 80 (146) T protein:vir:10 15 LVTELDQMGLRGEKIEDKALAAGGEPIRKAIAERAPRSPSPK----KRSKSEPWRTGQHGA-------DQI---KVTKAK 80 (146) T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc----ccccccccccccccc-------ccc---eecccc Confidence 666677777777777778887777777666666554333221 1111110000 0000 011 111111 Q ss_pred cc--cceeEEeeEE--ccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 80 QT--VTGVRVGRKN--YDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYV 155 (159) Q Consensus 80 ~~--~~gv~~g~~~--~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~ 155 (159) .. ...+.+|-.. -.++|.+.+ .=-|.+..| .-|. ....++...+++.+.|.+.|.++|+.. T Consensus 81 ~~~g~~~~~vg~~~~~~~~~~y~~f--------~E~GT~~~~----a~PF---l~pa~~~~k~~~~~~~~~~l~~~l~ka 145 (146) T protein:vir:10 81 LEGGIKTVKIGLNKADRSPWFYLKF--------HEWGTSKMP----AHPF---IEPGFNASKAEAVRAMTDILKNEMRLD 145 (146) T ss_pred ccccceeEEeeeccCCCCCcceeee--------eccCCCCCC----CCcc---hhHHHHHhHHHHHHHHHHHHHHHHhhc Confidence 11 1223333211 122343322 112333322 1122 234455555566666666666666666 Q ss_pred h Q lcl|NC_010342. 156 L 156 (159) Q Consensus 156 L 156 (159) | T Consensus 146 ~ 146 (146) T protein:vir:10 146 L 146 (146) T ss_pred C Confidence 6 No 44 >protein:vir:107568 Length: 146 # NCBI annotation: conserved phage protein, HK97 gp10 family # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338191;genbank:gi:77020147;genbank:GeneID:3703699 Probab=74.09 E-value=0.16 Score=24.91 Aligned_cols=127 Identities=13% Similarity=0.168 Sum_probs=55.2 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecC-CCcEEEEEEcccccchhhccCCc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRI-ADGEVKVWVGLTPLSVHYLGDPR 79 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~-~~~~~~i~~~~~~i~~~~~g~~r 79 (159) +.+.|...+..+.+++..||...+.-+...+...+....+-. ++.+...... .... ..| .+...+ T Consensus 15 l~~~l~~L~~~~~~~~~~al~~ga~~i~~~ak~~ap~~~~~~----~~~~~~~~~~~~~~~-------~~i---~~~~~~ 80 (146) T protein:vir:10 15 LVTELDQMGLRGEKIEDKALAAGGEPIRKAIAERAPRSPSPK----KRSKSEPWRTGQHGA-------DQI---KVTKAK 80 (146) T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc----ccccccccccccccc-------ccc---eecccc Confidence 666677777777777778887777777666666554333221 1111110000 0000 011 111111 Q ss_pred cc--cceeEEeeEE--ccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 80 QT--VTGVRVGRKN--YDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYV 155 (159) Q Consensus 80 ~~--~~gv~~g~~~--~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~ 155 (159) .. ...+.+|-.. -.++|.+.+ .=-|.+..| .-|. ....++...+++.+.|.+.|.++|+.. T Consensus 81 ~~~g~~~~~vg~~~~~~~~~~y~~f--------~E~GT~~~~----a~PF---l~pa~~~~k~~~~~~~~~~l~~~l~ka 145 (146) T protein:vir:10 81 LEGGIKTVKIGLNKADRSPWFYLKF--------HEWGTSKMP----AHPF---IEPGFNASKAEAVRAMTDILKNEMRLD 145 (146) T ss_pred ccccceeEEeeeccCCCCCcceeee--------eccCCCCCC----CCcc---hhHHHHHhHHHHHHHHHHHHHHHHhhc Confidence 11 1223333211 122343322 112333322 1122 234455555566666666666666666 Q ss_pred h Q lcl|NC_010342. 156 L 156 (159) Q Consensus 156 L 156 (159) | T Consensus 146 ~ 146 (146) T protein:vir:10 146 L 146 (146) T ss_pred C Confidence 6 No 45 >protein:vir:102085 Length: 146 # NCBI annotation: head-tail joining protein # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512318;genbank:gi:89152487;genbank:GeneID:3953078 Probab=74.09 E-value=0.16 Score=24.91 Aligned_cols=127 Identities=13% Similarity=0.168 Sum_probs=55.2 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecC-CCcEEEEEEcccccchhhccCCc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRI-ADGEVKVWVGLTPLSVHYLGDPR 79 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~-~~~~~~i~~~~~~i~~~~~g~~r 79 (159) +.+.|...+..+.+++..||...+.-+...+...+....+-. ++.+...... .... ..| .+...+ T Consensus 15 l~~~l~~L~~~~~~~~~~al~~ga~~i~~~ak~~ap~~~~~~----~~~~~~~~~~~~~~~-------~~i---~~~~~~ 80 (146) T protein:vir:10 15 LVTELDQMGLRGEKIEDKALAAGGEPIRKAIAERAPRSPSPK----KRSKSEPWRTGQHGA-------DQI---KVTKAK 80 (146) T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc----ccccccccccccccc-------ccc---eecccc Confidence 666677777777777778887777777666666554333221 1111110000 0000 011 111111 Q ss_pred cc--cceeEEeeEE--ccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 80 QT--VTGVRVGRKN--YDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYV 155 (159) Q Consensus 80 ~~--~~gv~~g~~~--~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~ 155 (159) .. ...+.+|-.. -.++|.+.+ .=-|.+..| .-|. ....++...+++.+.|.+.|.++|+.. T Consensus 81 ~~~g~~~~~vg~~~~~~~~~~y~~f--------~E~GT~~~~----a~PF---l~pa~~~~k~~~~~~~~~~l~~~l~ka 145 (146) T protein:vir:10 81 LEGGIKTVKIGLNKADRSPWFYLKF--------HEWGTSKMP----AHPF---IEPGFNASKAEAVRAMTDILKNEMRLD 145 (146) T ss_pred ccccceeEEeeeccCCCCCcceeee--------eccCCCCCC----CCcc---hhHHHHHhHHHHHHHHHHHHHHHHhhc Confidence 11 1223333211 122343322 112333322 1122 234455555566666666666666666 Q ss_pred h Q lcl|NC_010342. 156 L 156 (159) Q Consensus 156 L 156 (159) | T Consensus 146 ~ 146 (146) T protein:vir:10 146 L 146 (146) T ss_pred C Confidence 6 No 46 >protein:vir:106623 Length: 115 # NCBI annotation: ORF049 # Family: family:all:180 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239497;genbank:gi:66395260;genbank:GeneID:4555777 Probab=73.71 E-value=0.17 Score=24.84 Aligned_cols=105 Identities=10% Similarity=0.053 Sum_probs=55.2 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHheeeecCCCcEEEEEEcccccchhhccCC Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIV--QRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDP 78 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik--~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~ 78 (159) +.+.|...++.+..++..||.+.+..+...+.+...+.++.+ -+.++..|.+.+ .++.++.|..+ T Consensus 9 L~~~l~~~~~~~~~~~~~al~~~~~~i~~~a~~~a~~~~~~pv~TG~Lr~sI~~~~-~g~~~~~v~~~------------ 75 (115) T protein:vir:10 9 LMNHLKVMHDDIEDDVDDILKNNAKEGVGIAVSNAKEVMNKGYWTGNLASLIEVKK-IGDLHYRVIST------------ 75 (115) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCcchhhhhceeeee-cCcEEEEeeCC------------ Confidence 777788888888899999999999998888877776666554 355777665442 12233333322 Q ss_pred ccccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|NC_010342. 79 RQTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVLS 157 (159) Q Consensus 79 r~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L~ 157 (159) +|.+ .|.=-|.+..|=+ |.+-| .++... ..+..+|+++++ T Consensus 76 ----------------~~Ya--------~~vEfGT~km~a~----PFl~P---A~~~~k--------~~~~~~i~~~i~ 115 (115) T protein:vir:10 76 ----------------AHYS--------GFLEFGTRYMEPA----PFMFP---TYQTLK--------KSTINDLKRLLS 115 (115) T ss_pred ----------------Cccc--------hheecccccCCCC----Cchhh---hHHHHH--------HHHHHHHHHHhC Confidence 1111 1222222221111 33222 222222 233334444444 No 47 >protein:vir:97327 Length: 116 # NCBI annotation: ORF041 # Family: family:all:180 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240615;genbank:gi:66396305;genbank:GeneID:5133683 Probab=69.15 E-value=0.14 Score=25.32 Aligned_cols=116 Identities=10% Similarity=0.024 Sum_probs=56.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCccccceeEEeeEE Q lcl|NC_010342. 12 LDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPRQTVTGVRVGRKN 91 (159) Q Consensus 12 ~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r~~~~gv~~g~~~ 91 (159) +++++.++|.+++..+..++.... -+.-+.+++.|+.....++.++.|+.+..-=+...||+.-....+-...... T Consensus 1 v~~~v~~~~~~~~~~i~~~ak~~a----Pv~TG~Lr~SI~~~~~~~~~~~~V~~~~~YA~yvE~GTg~~~~~~~~~~~~~ 76 (116) T protein:vir:97 1 MERWVKRGIAKTTAKIHNTIISLM----PVDTGYLRESVTMDFKDGGFTGVINIGSEYAIYVNYGTGIYATGAGGSRAKK 76 (116) T ss_pred ChHHHHHHHHHHHHHHHHHHHHhC----CcCcccccccceEEeecCcEEEEEecCCCcccccccCCcccccCCCcccccc Confidence 888888888888888777665533 4556889999987766667788887765433444566533222211110011 Q ss_pred ccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 92 YDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFE 149 (159) Q Consensus 92 ~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~ 149 (159) ++ +......|+ |.++ +-|.+ ...+....++....|.++|- T Consensus 77 ~~--~~~~~~~g~---~~~t------------~g~~a-~Pfl~pA~~~~~~~i~k~i~ 116 (116) T protein:vir:97 77 IP--WSYKDANGK---WHTT------------KGQHA-QPFWEPAIDAGRAFFNKYFS 116 (116) T ss_pred cc--eeeecCCce---eeec------------CCcCC-CcchHHHHHHHHHHHHHhhC Confidence 11 111111222 2221 11111 12222222222233333333 No 48 >protein:vir:1243 Length: 116 # NCBI annotation: similar to phage Spp1 gp16.1 # Family: family:all:180 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510942;genbank:gi:17426276;genbank:GeneID:927389 Probab=69.15 E-value=0.14 Score=25.32 Aligned_cols=116 Identities=10% Similarity=0.024 Sum_probs=56.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCccccceeEEeeEE Q lcl|NC_010342. 12 LDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPRQTVTGVRVGRKN 91 (159) Q Consensus 12 ~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r~~~~gv~~g~~~ 91 (159) +++++.++|.+++..+..++.... -+.-+.+++.|+.....++.++.|+.+..-=+...||+.-....+-...... T Consensus 1 v~~~v~~~~~~~~~~i~~~ak~~a----Pv~TG~Lr~SI~~~~~~~~~~~~V~~~~~YA~yvE~GTg~~~~~~~~~~~~~ 76 (116) T protein:vir:12 1 MERWVKRGIAKTTAKIHNTIISLM----PVDTGYLRESVTMDFKDGGFTGVINIGSEYAIYVNYGTGIYATGAGGSRAKK 76 (116) T ss_pred ChHHHHHHHHHHHHHHHHHHHHhC----CcCcccccccceEEeecCcEEEEEecCCCcccccccCCcccccCCCcccccc Confidence 888888888888888777665533 4556889999987766667788887765433444566533222211110011 Q ss_pred ccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 92 YDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFE 149 (159) Q Consensus 92 ~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~ 149 (159) ++ +......|+ |.++ +-|.+ ...+....++....|.++|- T Consensus 77 ~~--~~~~~~~g~---~~~t------------~g~~a-~Pfl~pA~~~~~~~i~k~i~ 116 (116) T protein:vir:12 77 IP--WSYKDANGK---WHTT------------KGQHA-QPFWEPAIDAGRAFFNKYFS 116 (116) T ss_pred cc--eeeecCCce---eeec------------CCcCC-CcchHHHHHHHHHHHHHhhC Confidence 11 111111222 2221 11111 12222222222233333333 No 49 >protein:vir:966 Length: 123 # NCBI annotation: Orf48 # Family: family:all:970 # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076620;genbank:gi:13095728;genbank:GeneID:920248 Probab=67.99 E-value=0.24 Score=23.94 Aligned_cols=110 Identities=7% Similarity=0.046 Sum_probs=50.3 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCcc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPRQ 80 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r~ 80 (159) |.+.|..+.+.+...+..+++.++..+..... +..-.+.+..++..++++...+ ...++.+.+.-+|.|| T Consensus 14 i~~~L~~y~~~v~~~v~~~v~~~a~~~~~~lk----~~sP~~TG~yaksW~~k~~~~~-~~~v~~~~~~y~l~HL----- 83 (123) T protein:vir:96 14 IESEVRNWTKDVVDDIDDIKKDITKNGVKQLR----ESSPKRTGDYAKNWTSQKLKNG-DQVIYQKAPTYRLTHL----- 83 (123) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhCCccccccccceeeeecCCe-eEEEEEecCCcceEEe----- Confidence 77888888888888888888877776655444 3333344566666666654332 2233333333333332 Q ss_pred ccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc Q lcl|NC_010342. 81 TVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVLSS 158 (159) Q Consensus 81 ~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L~~ 158 (159) +. +||. .|.| .|. -.-|-+.|+ ++.+.+.|+++|.++|.+ T Consensus 84 -----------LE--------~GHa---~r~G-GrV----~a~phI~pa-----------ee~~~~~l~~~i~r~l~~ 123 (123) T protein:vir:96 84 -----------LE--------NGHA---KRNG-GRV----SPKVHIAPV-----------EEELVSNYISRVEKRLSQ 123 (123) T ss_pred -----------ee--------ccee---ecCC-cee----CcchhhhHH-----------HHHHHHHHHHHHHHHhcC Confidence 11 1111 1111 110 111222222 122223333333333333 No 50 >protein:vir:93617 Length: 148 # NCBI annotation: putative structural component # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449299;genbank:gi:157166047;interpro:IPR010064;interpro:IPR011693;uniprot:Q6H9U2;genbank:GeneID:5580439 Probab=65.74 E-value=0.28 Score=23.63 Aligned_cols=131 Identities=14% Similarity=0.102 Sum_probs=64.9 Q ss_pred ChHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecC-C--CcEEEEEEcccccchhhcc Q lcl|NC_010342. 1 MPELINATKKQL-DTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRI-A--DGEVKVWVGLTPLSVHYLG 76 (159) Q Consensus 1 i~~~l~~~~~~~-~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~-~--~~~~~i~~~~~~i~~~~~g 76 (159) +.+.|+..+..+ .++...||...+.-+...+...+. +....+++.+.+.... . .....|.... + T Consensus 14 l~~~l~~L~~~~~~~~~~~Al~~~a~~v~~~ak~~aP----~~~g~l~~~i~~~~~~~~~g~~~~~v~~~~--~------ 81 (148) T protein:vir:93 14 ISRDLQLLSGAENNRVLREATRAGANVLKEEVVSRAP----VRRGKLRRNVVVLSRRSRDGGMESGVHIRG--V------ 81 (148) T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----CCcchhhhhceeccccccCCceeeeeeecc--c------ Confidence 556666665554 456677777777766666655543 2345666766654221 1 2222222211 1 Q ss_pred CCccccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|NC_010342. 77 DPRQTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVL 156 (159) Q Consensus 77 ~~r~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L 156 (159) .......+..++...-..+|.+ -|.=-|.+. .|-..=....++.-.+++.+.|...|..+|+..| T Consensus 82 ~~~~~~~~~~~~~~~~~~~~y~--------~f~E~GT~~-------~pa~PFl~pA~~~~k~~~~~~~~~~~~~~i~k~~ 146 (148) T protein:vir:93 82 NPDTGNSDNTMKADNPRNAFYW--------RFVEMGTVN-------MPPHPFVRPAFDVRSEQAAQVAIARMNRAIDEVL 146 (148) T ss_pred ccccccccceeecCCCCCccee--------eeeccCCCC-------CCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHh Confidence 1111112112211100112221 122223332 1211124556677777888888899999999999 Q ss_pred cc Q lcl|NC_010342. 157 SS 158 (159) Q Consensus 157 ~~ 158 (159) ++ T Consensus 147 ~k 148 (148) T protein:vir:93 147 RR 148 (148) T ss_pred cC Confidence 99 No 51 >protein:vir:99744 Length: 115 # NCBI annotation: hypothetical protein # Family: family:all:180 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004311;genbank:gi:122891765;genbank:GeneID:4712299 Probab=65.47 E-value=0.28 Score=23.59 Aligned_cols=105 Identities=11% Similarity=0.071 Sum_probs=52.5 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHheeeecCCCcEEEEEEcccccchhhccCC Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIV--QRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDP 78 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik--~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~ 78 (159) +.+.|...++.+..++..|+...+..+..++.......++.| -+.++..|...+. ++..+.|.+ T Consensus 9 L~~~l~~~~~~~~~~v~~av~~~~~~i~~~a~~~a~~~~~~p~~TG~Lr~SI~~~~~-g~~~~~V~~------------- 74 (115) T protein:vir:99 9 LLNQFHDMKTNIDDDVDDILQENAKEYVVRAKLKAREVMNKGYWTGNLSRNIRYKKT-VDLQYTITS------------- 74 (115) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCcchhhhhceeeeec-CcEEEEecC------------- Confidence 777788888889999999999999999888877665555444 3456665544321 112222221 Q ss_pred ccccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|NC_010342. 79 RQTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVLS 157 (159) Q Consensus 79 r~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L~ 157 (159) +++.+ .|.=-|.+..|= =|.+- ..++.... .|.++|++.++ T Consensus 75 ---------------~~~Ya--------~~vE~GT~~m~a----~PFl~---PA~~~~k~--------~~~~~l~~~~k 115 (115) T protein:vir:99 75 ---------------HAAYS--------GFLEFGTRYMEA----EPFMW---PVYEVIRK--------STVEELKTLFE 115 (115) T ss_pred ---------------Ccccc--------ccccccccccCC----CCcch---hhHHHHHH--------HHHHHHHHHhC Confidence 12211 121122221111 13322 22332222 23333333444 No 52 >protein:vir:102963 Length: 163 # NCBI annotation: hypothetical protein # Family: family:all:1892 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945289;genbank:gi:39653724;uniprot:Q708M3;genbank:GeneID:2672877 Probab=62.29 E-value=0.34 Score=23.17 Aligned_cols=137 Identities=9% Similarity=0.009 Sum_probs=47.7 Q ss_pred ChHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH-HHHHHheee--ecCCCcEEEEEEcccccch-hh Q lcl|NC_010342. 1 MPELINA--TKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQR-PLRQRFRMY--SRIADGEVKVWVGLTPLSV-HY 74 (159) Q Consensus 1 i~~~l~~--~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k-~vr~~~~~~--~a~~~~~~~i~~~~~~i~~-~~ 74 (159) .++.|.. ....++..+...+|..+..+. +.+-+.+=+-.. ..+...... +.........--.++.+.- .+ T Consensus 13 f~k~l~~~~~~~~~~~~~~~~~~e~a~~ll----~~vk~rtPv~~~~~~~~~~~~~~~k~~k~~~~~~~k~tG~lr~swk 88 (163) T protein:vir:10 13 FANNFNRNANHAKVDRFMRQTLNYEGTELK----SKVKERTPVGVYTDHWVEFTTKDGKHVKFWASAHGKQGGTLQKGWS 88 (163) T ss_pred HHHHHHHHhhhcchHHHHHHHHHHHHHHHH----HHHHHhCCcccchhhhhhhhhcccchhhhhccccccccchhhccce Confidence 2223321 123344445555565555554 444443322211 111000000 0000000000000111110 01 Q ss_pred ccCCccccceeEE--eeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 75 LGDPRQTVTGVRV--GRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEA 152 (159) Q Consensus 75 ~g~~r~~~~gv~~--g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei 152 (159) .++++.+..+..+ ....---.|+ -.||..+ .| . .|| -.-.++..++++++.|++.|+..| T Consensus 89 ~~~~~k~~~~~~v~v~N~~~YA~~V---E~GHR~~---~g-G-------fV~----G~fml~~s~~~~~~~~~~~~e~~l 150 (163) T protein:vir:10 89 KSRIEVSGRTYKQKVYNKVYYAPHV---EYGHKTV---NG-G-------FVP----GQFFLHKTVEDTKSDMEKRVRDKY 150 (163) T ss_pred ecceeecCCceEEEEEecCCccchh---hcceeec---CC-c-------eec----cchhhHHHHHHHHHHHHHHHHHHH Confidence 1223333332222 1111001122 2466443 11 1 233 223345555666677777777777 Q ss_pred HHHhccC Q lcl|NC_010342. 153 RYVLSSA 159 (159) Q Consensus 153 ~~~L~~a 159 (159) ...|.+. T Consensus 151 ~~~l~k~ 157 (163) T protein:vir:10 151 DGFMRKV 157 (163) T ss_pred HHHHHHh Confidence 7777766 No 53 >protein:vir:1437 Length: 140 # NCBI annotation: hypothetical protein # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536366;genbank:gi:17975171;genbank:GeneID:929147 Probab=62.00 E-value=0.34 Score=23.13 Aligned_cols=122 Identities=16% Similarity=0.106 Sum_probs=64.0 Q ss_pred ChHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCC-CcEEEEEEcccccchhhccCC Q lcl|NC_010342. 1 MPELINATKKQL-DTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIA-DGEVKVWVGLTPLSVHYLGDP 78 (159) Q Consensus 1 i~~~l~~~~~~~-~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~-~~~~~i~~~~~~i~~~~~g~~ 78 (159) +.+.|..++..+ .+++..||...+.-+...+.+.+. ...+.+++.|.+..... .....+.+ T Consensus 12 l~~~l~~l~~~~~~~~~~~al~~~a~~v~~~ak~~aP----~~tG~l~~sI~~~~~~~~~~~~~~~v------------- 74 (140) T protein:vir:14 12 LRADFEKLAKSQSAKALRRATLAGAKVIRDEARKRAP----KKTGKLRRNIVSAALRQKDAPGLATA------------- 74 (140) T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CChhhHHhhcccccccccccceeEEe------------- Confidence 555555555444 456777787777777766665443 33456777666532211 11111111 Q ss_pred ccccceeEEeeEE----ccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 79 RQTVTGVRVGRKN----YDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARY 154 (159) Q Consensus 79 r~~~~gv~~g~~~----~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~ 154 (159) |+.++... -..+|.+. |.=-|.+. .|-..=....++...+++.+.|.+.|..+|+. T Consensus 75 -----g~~~~~~~~~~~~~~~~y~~--------f~E~GT~~-------~~a~pFl~pa~~~~~~~~~~~~~~~~~~~l~k 134 (140) T protein:vir:14 75 -----GVRVRTKGKADSPNNAFYWR--------FDEFGTQH-------MKAQPFMRPAFDASIGEAEGAIRTELARAIDR 134 (140) T ss_pred -----eeeeccccccCCCCccceee--------eeccccCC-------CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH Confidence 11110000 00112211 11122222 12222245667788889999999999999999 Q ss_pred HhccC Q lcl|NC_010342. 155 VLSSA 159 (159) Q Consensus 155 ~L~~a 159 (159) .|+|+ T Consensus 135 ~~~~~ 139 (140) T protein:vir:14 135 VLGGR 139 (140) T ss_pred Hhhcc Confidence 99999 No 54 >protein:vir:95062 Length: 116 # NCBI annotation: ORF044 # Family: family:all:180 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240827;genbank:gi:66394711;genbank:GeneID:5133856 Probab=61.71 E-value=0.24 Score=24.02 Aligned_cols=116 Identities=10% Similarity=-0.023 Sum_probs=55.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCccccceeEEeeEE Q lcl|NC_010342. 12 LDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPRQTVTGVRVGRKN 91 (159) Q Consensus 12 ~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r~~~~gv~~g~~~ 91 (159) +++++.++|.+++..+..++... .-+.-+.+++.|+.....++.++.|+.+..-=+...||+.-....+-...... T Consensus 1 v~~~v~~~~~~~~~~i~~~ak~~----apv~TG~Lr~SI~~~~~~~~~~~~V~~~~~Ya~yvE~GTg~~~~~~~~~~~~~ 76 (116) T protein:vir:95 1 MERWVKRGIAKTTAKIHNTIISL----MPVDTGYLRESVTMDFKDGGFTGVINIGSEYAIYVNYGTGIYATGAGGSRAKN 76 (116) T ss_pred ChHHHHHHHHHHHHHHHHHHHhh----CCccccccccceeEEeecCcEEEEEecCCCccceeecCccccccCCCcccccc Confidence 88888888888888877666553 34566789999987766667778887654433344566432211111000011 Q ss_pred ccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 92 YDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFE 149 (159) Q Consensus 92 ~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~ 149 (159) ++ |.....+|.+ ++.| -|. ....+....++....|.++|- T Consensus 77 ~~--~~~~~~~g~~-~~t~--------------g~~-a~Pfl~pA~~~~~~~i~k~is 116 (116) T protein:vir:95 77 IP--WSYKDANGKW-HTTK--------------GQH-AQPFWEPAIDAGRAFFNKYFS 116 (116) T ss_pred cc--ceeecCccce-eeCC--------------CCC-CCcchHHHHHHHHHHHHHhhC Confidence 11 1111122322 1211 111 112222222222333333333 No 55 >protein:vir:81147 Length: 126 # NCBI annotation: hypothetical protein # Family: family:all:970 # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285816;genbank:gi:148747737;genbank:GeneID:5247190 Probab=59.99 E-value=0.061 Score=27.25 Aligned_cols=98 Identities=6% Similarity=0.076 Sum_probs=54.0 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCC--CcEEEEEEcccccch---hhc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIA--DGEVKVWVGLTPLSV---HYL 75 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~--~~~~~i~~~~~~i~~---~~~ 75 (159) |.+.|+.+...+..++..|+..++..+...+.....+ .-+..++.+++++..+ .....+|.+. .-.+ .-| T Consensus 13 I~~~L~~y~~~v~~~v~~~v~~~a~~~~~~ik~~aP~----rTG~y~ksw~vk~~~~~g~~~~vv~~~~-~~~l~HLLEf 87 (126) T protein:vir:81 13 LLQAVKEYTDDVAEGVRKKVDETARKVLKEAQALAPK----RTGEYARTFTITKEDGYGTTKRIIWNKK-HYRRVHLLEF 87 (126) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc----ccchhhccccccccccCCcceEEEeccC-CCCceeeeec Confidence 7777888888888888888888887777666555544 4567888888776543 2334455433 3333 345 Q ss_pred cCCccccceeEEeeEEccCc-------eec----ccCCCC Q lcl|NC_010342. 76 GDPRQTVTGVRVGRKNYDSA-------FVN----PMRSRQ 104 (159) Q Consensus 76 g~~r~~~~gv~~g~~~~~ga-------Fia----~~~~g~ 104 (159) |..+... |-..++..+.=| |.. .+.||. T Consensus 88 Gha~r~g-GrV~a~Phi~Pa~e~~~~~~~~~i~~~l~~gg 126 (126) T protein:vir:81 88 GHAKVNG-GRVKEYPHLRPAYDKHGARLPDELKRVIENGG 126 (126) T ss_pred ceecCCC-CccCCCcchHHHHHHHHHHHHHHHHHHhhcCC Confidence 7654322 222222221111 111 222333 No 56 >protein:vir:100075 Length: 140 # NCBI annotation: gp9 # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945039;genbank:gi:38707899;genbank:GeneID:2744122 Probab=59.88 E-value=0.38 Score=22.87 Aligned_cols=126 Identities=12% Similarity=0.065 Sum_probs=64.9 Q ss_pred ChHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCC-CcEEEEEEcccccchhhccCC Q lcl|NC_010342. 1 MPELINATKKQL-DTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIA-DGEVKVWVGLTPLSVHYLGDP 78 (159) Q Consensus 1 i~~~l~~~~~~~-~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~-~~~~~i~~~~~~i~~~~~g~~ 78 (159) +.+.|..+++.+ .+++..|+...+.-+...+...+.. ..+.+++.|.+..... +....+.++.. . + T Consensus 12 l~~~l~~L~~~~~~k~~~~al~~~a~~v~~~ak~~aP~----~tG~l~~sI~~~~~~~~~~~~~~~~g~~-~-----~-- 79 (140) T protein:vir:10 12 LRADFEKLAKSQSTKALRRATVAGAKVIRDEARKRAPK----KTGKLRRNIVSAALRQKDAPGLATAGVR-V-----R-- 79 (140) T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----ChhhHHHhccccccccccccceEEeeee-e-----c-- Confidence 555556555554 4677778888777777776665543 3456777766543221 11111111100 0 0 Q ss_pred ccccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc Q lcl|NC_010342. 79 RQTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVLSS 158 (159) Q Consensus 79 r~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L~~ 158 (159) ...++..+...|-.-|+ =-|.+. .|-..=....++...+++.+.+.+.|..+|+..|+| T Consensus 80 --~~~~~~~~~~~~y~~f~------------E~GT~~-------~~a~PFl~pA~~~~~~~~~~~~~~~~~~~l~k~~~~ 138 (140) T protein:vir:10 80 --TKGKADSPNNAFYWRFD------------EFGTQH-------MKAQPFMRPAFDASIGEAEGAIRTELARAIDRVLGG 138 (140) T ss_pred --cccccCCCCccceeeee------------ccCCCC-------CCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhc Confidence 00000001111111122 122222 121112455667778899999999999999999999 Q ss_pred C Q lcl|NC_010342. 159 A 159 (159) Q Consensus 159 a 159 (159) . T Consensus 139 ~ 139 (140) T protein:vir:10 139 R 139 (140) T ss_pred c Confidence 9 No 57 >protein:vir:743 Length: 108 # NCBI annotation: unknown # Family: family:all:180 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108720;genbank:gi:13487842;genbank:GeneID:920877 Probab=59.43 E-value=0.39 Score=22.81 Aligned_cols=102 Identities=7% Similarity=-0.005 Sum_probs=43.4 Q ss_pred ChHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCc Q lcl|NC_010342. 1 MPELINATKK-QLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPR 79 (159) Q Consensus 1 i~~~l~~~~~-~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r 79 (159) +.++...+.+ +.+.++..||..++..+..++.. ...+.-+.+++.+++....++..+.|.++.. T Consensus 6 ld~l~~~l~~~~~~~~~~~al~~~a~~i~~~ak~----~aPv~TG~Lr~si~~~~~~~~~~~~V~~~~~----------- 70 (108) T protein:vir:74 6 IDALQKKLRKNATLDDVKHVVKSNTASMNKNMQN----LAPVDTGNMKRSITSEFTDGGLSGTTGPHTD----------- 70 (108) T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----hCCCCchhhhccceeeeecCceEEEeecCCC----------- Confidence 4444433332 34556667777777666655543 3455566777777665444444444432211 Q ss_pred cccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|NC_010342. 80 QTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVLS 157 (159) Q Consensus 80 ~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L~ 157 (159) | +.|+- .|+. . .|-..=....++.. ...|.++|+..| . T Consensus 71 ------------Y-a~~vE---~GT~---------k-------m~aqpf~~pa~~~~----~~~~~~~i~~~~----k 108 (108) T protein:vir:74 71 ------------Y-AGYVE---YGTR---------F-------QSAQPFVKPAFNIQ----KKVFTNDLERLT----K 108 (108) T ss_pred ------------c-cccee---cccc---------c-------cCCCcchhhHHHHH----HHHHHHHHHHHc----C Confidence 1 22331 2221 1 11111122233333 333333333333 3 No 58 >protein:vir:80362 Length: 140 # NCBI annotation: gp10, phage protein, HK97 gp10 family # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111089;genbank:gi:134288660;genbank:GeneID:4960609 Probab=57.73 E-value=0.43 Score=22.60 Aligned_cols=124 Identities=11% Similarity=0.078 Sum_probs=63.1 Q ss_pred ChHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCC---CcEEEEEEcccccchhhcc Q lcl|NC_010342. 1 MPELINATKKQL-DTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIA---DGEVKVWVGLTPLSVHYLG 76 (159) Q Consensus 1 i~~~l~~~~~~~-~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~---~~~~~i~~~~~~i~~~~~g 76 (159) +.+.|...+..+ .+++..|+...+.-+...+...+... .+.+++.+.+..... +..+.+.+..+.-. T Consensus 12 l~~~l~~l~~~~~~k~~~~a~~~~a~~v~~~ak~~aP~~----tG~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~----- 82 (140) T protein:vir:80 12 LLADFERLAKSQSTKALRRATVAGAKVIRDEARKRAPKK----TGKLRRNIVSAALRQKDAPGLATAGVRVRTKG----- 82 (140) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----cchhhhceeeeccccccccceeeeeeeccccc----- Confidence 555555554443 45777788877777777666655332 335555554432111 11111111111000 Q ss_pred CCccccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|NC_010342. 77 DPRQTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVL 156 (159) Q Consensus 77 ~~r~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L 156 (159) +...-..+|.+ -|.=-|.+.. |-..=....++...+++.+.+...|.++|+..| T Consensus 83 -----------~~~~~~~~~y~--------~f~E~GT~~~-------~a~PFl~pA~~~~~~~~~~~~~~~~~~~l~k~~ 136 (140) T protein:vir:80 83 -----------KADSPSNAFYW--------RFDEFGTQHM-------KAQPFMRPAFDASIGEAEGAIRTELARAIDQAL 136 (140) T ss_pred -----------ccCCCCCccee--------eeeccCCCCC-------CCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh Confidence 00000011221 1111222221 211224566788888999999999999999999 Q ss_pred ccC Q lcl|NC_010342. 157 SSA 159 (159) Q Consensus 157 ~~a 159 (159) +|+ T Consensus 137 ~~~ 139 (140) T protein:vir:80 137 GGR 139 (140) T ss_pred hcc Confidence 999 No 59 >protein:vir:94654 Length: 142 # NCBI annotation: tail component protein # Family: family:all:1084 # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579211;genbank:gi:93007447;genbank:GeneID:5076773 Probab=44.55 E-value=0.8 Score=21.11 Aligned_cols=128 Identities=12% Similarity=0.079 Sum_probs=62.2 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccc--cchhhccCC Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTP--LSVHYLGDP 78 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~--i~~~~~g~~ 78 (159) +.+.|..+++.+..++.++|..++..+..++...+. +.-+.+++.++.....++....+.++.+. -....+|+. T Consensus 13 l~~~l~~~~~~~~~~~~~~l~~~a~~i~~~ak~~aP----v~TG~Lr~SI~~~~~~~g~~~~~~v~~~~~YA~~vE~Gt~ 88 (142) T protein:vir:94 13 FQGALRAALDRLTGAAREATEAAANDMVNMAKGLCP----VDTGRLRSSIQAVPSGGRFSFSVTIGTNVTYAADVEYGTA 88 (142) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----ccchhhhccceeeeccCCceEEEEEecCcccchhhhccCC Confidence 677888888889999999999998888777755544 45689999998776666555444444332 223345642 Q ss_pred ccccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 79 RQTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEAR 153 (159) Q Consensus 79 r~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~ 153 (159) -..-.+. +++.+ .|- .+++ +.+.+..|-+.+ ...+..-.++..+.+ +.+-.+|+ T Consensus 89 ~~~i~pk--~~k~l--~~~---~~~~------------~~~~v~~pG~~~-~pfl~~A~~~~~~~i-~~~~~~~~ 142 (142) T protein:vir:94 89 PHVIVPK--DKKAL--YWP---GAAH------------PVAKVNHPGTRA-QPFMRPAIAAASTFL-RNHAKGIR 142 (142) T ss_pred CceeccC--CCccc--eec---ccce------------eeeeeeecCCCC-CcchhHHHHHHHHHH-HHHHHhcC Confidence 1110000 00000 110 0011 112233343332 222221112222222 22223333 No 60 >protein:vir:8669 Length: 142 # NCBI annotation: gp27 # Family: family:all:1084 # MgeID: mge:156 # MgeName: Rosebush # Cross-refs: genbank:acc:NP_817788;genbank:gi:29566220;genbank:GeneID:1259476 Probab=43.99 E-value=0.82 Score=21.05 Aligned_cols=128 Identities=10% Similarity=-0.041 Sum_probs=58.4 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcE----EEEEEcccccchhhcc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGE----VKVWVGLTPLSVHYLG 76 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~----~~i~~~~~~i~~~~~g 76 (159) +...|...+.++..++.++|++++..+..++...+ -++-+.+++.|+......... +.+.++..==+...+| T Consensus 11 l~~~l~~~~~~~~~~~~~~i~~~a~~v~~~Ak~~a----Pv~tG~Lr~SI~~~~~~~~~~~~~~~~v~~~a~YA~~ve~G 86 (142) T protein:vir:86 11 FDYNPVGAAAQVGPILRRTHSSLTRQIANETRARV----PVLTGHLGRSVREDPQVMVTPFHVSGGVTAHAKYAAAVHEG 86 (142) T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CccchhhhcceeeeeccccccceEEEEeccCccccceeccC Confidence 77889999999999999999999988777775443 345678888887544332222 2222211111223455 Q ss_pred CCccccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 77 DPRQTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEAR 153 (159) Q Consensus 77 ~~r~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~ 153 (159) +.-.. ..-....++-.. .+|++ +|. +.+..|-+.+..-+...++....+ ....-++ T Consensus 87 T~ph~------i~pk~~~al~f~-~~g~~-~~~---------k~v~hpG~~a~Pfl~~A~~~~~~~----~~~~~~r 142 (142) T protein:vir:86 87 TRPHV------IRAKHAQALHFW-WRGRE-VFV---------RQVNHPGTRARPYLRNAGEAVVRR----DRRIRVR 142 (142) T ss_pred Cccce------eccccCceeeEe-cCCce-eee---------eeeecCCCCCCchhHHHHHHHHhh----hhhhccC Confidence 42110 000011111101 11222 333 234455443322222222211111 1111111 No 61 >protein:vir:99101 Length: 142 # NCBI annotation: gp25 # Family: family:all:1084 # MgeID: mge:1608 # MgeName: Qyrzula # Cross-refs: genbank:acc:YP_655705;genbank:gi:109521783;genbank:GeneID:4157823 Probab=43.99 E-value=0.82 Score=21.05 Aligned_cols=128 Identities=10% Similarity=-0.041 Sum_probs=58.4 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcE----EEEEEcccccchhhcc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGE----VKVWVGLTPLSVHYLG 76 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~----~~i~~~~~~i~~~~~g 76 (159) +...|...+.++..++.++|++++..+..++...+ -++-+.+++.|+......... +.+.++..==+...+| T Consensus 11 l~~~l~~~~~~~~~~~~~~i~~~a~~v~~~Ak~~a----Pv~tG~Lr~SI~~~~~~~~~~~~~~~~v~~~a~YA~~ve~G 86 (142) T protein:vir:99 11 FDYNPVGAAAQVGPILRRTHSSLTRQIANETRARV----PVLTGHLGRSVREDPQVMVTPFHVSGGVTAHAKYAAAVHEG 86 (142) T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CccchhhhcceeeeeccccccceEEEEeccCccccceeccC Confidence 77889999999999999999999988777775443 345678888887544332222 2222211111223455 Q ss_pred CCccccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 77 DPRQTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEAR 153 (159) Q Consensus 77 ~~r~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~ 153 (159) +.-.. ..-....++-.. .+|++ +|. +.+..|-+.+..-+...++....+ ....-++ T Consensus 87 T~ph~------i~pk~~~al~f~-~~g~~-~~~---------k~v~hpG~~a~Pfl~~A~~~~~~~----~~~~~~r 142 (142) T protein:vir:99 87 TRPHV------IRAKHAQALHFW-WRGRE-VFV---------RQVNHPGTRARPYLRNAGEAVVRR----DRRIRVR 142 (142) T ss_pred Cccce------eccccCceeeEe-cCCce-eee---------eeeecCCCCCCchhHHHHHHHHhh----hhhhccC Confidence 42110 000011111101 11222 333 234455443322222222211111 1111111 No 62 >protein:vir:3873 Length: 128 # NCBI annotation: putative head-tail joining protein # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680490;swissprot:trembl:p94214;genbank:gi:22296530;interpro:IPR010064;uniprot:P94214;genbank:GeneID:951688 Probab=43.90 E-value=0.83 Score=21.04 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=47.7 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCC Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELG--IVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDP 78 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~--ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~ 78 (159) +.+.|......+.++...||...+.-+...+...+....+ -+.+.++..|.+. .+ T Consensus 11 l~~~l~~l~~~~~k~~~~al~~ga~~~~~~~k~~ap~~~~~~~~~~h~~d~I~~~-----------------------~~ 67 (128) T protein:vir:38 11 LLANLNKLQFGVAKEARAAVRDGAQKFADKLKSNTPEWDGETDMSGHLRDDIKLS-----------------------SV 67 (128) T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCcccchhhhhhccc-----------------------cc Confidence 5566666666667777777777766666555443321110 0111222222221 11 Q ss_pred cccc--ceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 79 RQTV--TGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEAR 153 (159) Q Consensus 79 r~~~--~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~ 153 (159) +... ..+.||-.. +.+|.+.+- =-|.+..|= =|- ....++...+++.+.+.+.|.++|- T Consensus 68 k~~~g~~~~~VG~~k-~~~~y~~f~--------E~GT~k~~a----~pF---~~pa~~~~~~~~~~~~~~~l~k~i~ 128 (128) T protein:vir:38 68 RETSGLTEVDVGYGK-DTGWRAHFP--------NSGTSMQDP----QHF---IEETQEIMRPVVIAAFLSHLKEGGM 128 (128) T ss_pred cccCceeEEEeeecC-CCceEEeee--------ccCccCCCC----Ccc---hhHHHHHhHHHHHHHHHHHHHhhcC Confidence 1111 113343211 123443222 122222211 122 3344454455555555555555555 No 63 >protein:vir:1386 Length: 149 # NCBI annotation: Gp9 protein # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612838;genbank:gi:20065972;genbank:GeneID:935787 Probab=39.33 E-value=1 Score=20.53 Aligned_cols=131 Identities=10% Similarity=0.067 Sum_probs=60.7 Q ss_pred ChHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCC Q lcl|NC_010342. 1 MPELINAT--KKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDP 78 (159) Q Consensus 1 i~~~l~~~--~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~ 78 (159) |.+.|..+ +....++...||...+.-++..+...+...-. +.+..+. ..... ..+ ...|...++. . T Consensus 15 L~~~l~~L~~~~~~~k~~~~Al~~ga~~v~~~~k~~aP~~~~-~~~~~~~----~~~~~---~~~---~d~i~~~~~~-~ 82 (149) T protein:vir:13 15 LIKTFEQLGTEKENEDVEKSILKECGDLAKKTVAPLIHISDD-NSKSGRK----GSRPP---GHA---ANNIPEPKIR-K 82 (149) T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCC-ccccccc----ccccc---chh---hhcceecccc-c Confidence 44555554 35677788888887777776666555432111 0000000 00000 000 0112222221 1 Q ss_pred ccccceeEEeeEEccC--ceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|NC_010342. 79 RQTVTGVRVGRKNYDS--AFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVL 156 (159) Q Consensus 79 r~~~~gv~~g~~~~~g--aFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L 156 (159) +.....+.||-..-++ +|. |+ |.=-|.+..| .=|. ....++...+++.+.|.+.|..+|++.| T Consensus 83 ~~g~~~~~VG~~~~~~~~~~y-------~~-f~E~GT~k~~----a~pF---~~pa~~~~~~~~~~~~~~~l~k~i~~~l 147 (149) T protein:vir:13 83 KKGNLQCVVGWEKSDNTPFYY-------MK-MEEWGTSERP----PHHA---FGKTNKILKRVYDNIAQKKYDNFVKEKL 147 (149) T ss_pred ccceeEEEeeccCCCCCccce-------ee-eeccCccCCC----CCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 1122234554221111 122 22 2333555443 1122 3445666777888888888888888888 Q ss_pred cc Q lcl|NC_010342. 157 SS 158 (159) Q Consensus 157 ~~ 158 (159) .- T Consensus 148 G~ 149 (149) T protein:vir:13 148 GD 149 (149) T ss_pred cC Confidence 88 No 64 >protein:vir:78077 Length: 141 # NCBI annotation: gp9 # Family: family:all:180 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468793;genbank:gi:157325374;genbank:GeneID:5601839 Probab=39.20 E-value=1 Score=20.51 Aligned_cols=135 Identities=16% Similarity=0.077 Sum_probs=63.2 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGR-ELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPR 79 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~-~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r 79 (159) .++........+.+++.+++...+....+..+...++ ..-+.-+.+++++......++.++.|..+..-=+..++|+.. T Consensus 6 f~~~~~~~~~~~~k~~~~~~~~~a~~~~~~~ie~~ak~~~pvdtG~L~~SI~~~v~~~g~~~~V~~~~~YA~yVE~GTG~ 85 (141) T protein:vir:78 6 FDSNIPKARKLIEKKVLQALEDIGEHMTTELAEGGHGVTSNNDTGEYAQKSGYKVRKSSKEVIVGNSSDYAIYYEFGTGE 85 (141) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhcceeeeeecCCcEEEEecCCCccceeecCCcc Confidence 5555555666666666666666554444443333333 345667889999987765566777766654433344567543 Q ss_pred cccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|NC_010342. 80 QTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVL 156 (159) Q Consensus 80 ~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L 156 (159) ....| ++...+--| ..++|.+ +|.| | .+....+....++..+.+.+.|.++|..+= T Consensus 86 ~~~~~---~grk~~w~y--~~~~g~~-~~t~-G--------------~~aqpFl~~A~~~~~~~i~~~i~~~~~~l~ 141 (141) T protein:vir:78 86 KSERG---GGKAGGWFY--MDKKGHW-HFTR-G--------------SQASKRMRYTFRDEQDKVRVFTERALRGIN 141 (141) T ss_pred cccCC---CCCcCccee--ecCCCee-Eecc-C--------------CCCchhhhhhHHhhHHHHHHHHHHHhhccC Confidence 22211 111222112 1233443 2333 1 112222222222233334444444433322 No 65 >protein:vir:102338 Length: 116 # NCBI annotation: hypothetical protein # Family: family:all:26573 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529563;genbank:gi:90592648;genbank:GeneID:3974470 Probab=38.23 E-value=1.1 Score=20.41 Aligned_cols=110 Identities=8% Similarity=-0.058 Sum_probs=48.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH---HHHHHHheeeecCCCcEEEEEEcccccchhhccCCccccceeEEe Q lcl|NC_010342. 12 LDTAVNRALRGAGQWLRTHSVRELGRELGIVQ---RPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPRQTVTGVRVG 88 (159) Q Consensus 12 ~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~---k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r~~~~gv~~g 88 (159) +++++.+++|..|..+...+.+. +=++. +.+|+.-++-.... ....|. |+.+..++ T Consensus 1 l~~~~~~~~~~~a~~l~~~vk~r----TPv~~~d~G~LR~sW~~g~v~k-~~~~v~---N~~eYA~~------------- 59 (116) T protein:vir:10 1 MSKNLRRAKNNIGNKLLRKVKPK----TPVAKIDGGTARKSWKYKELNL-FDGVVS---NNVEYIHH------------- 59 (116) T ss_pred CchHHHHHHHHHHHHHHHHHHhh----CCCCcCCCcccccCceeeeeec-cCceee---cCCccccc------------- Confidence 66666666666666555544443 33432 44555444322110 001111 22221111 Q ss_pred eEEccCceecccCCCCeeEEEEcCCccc-c--eeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|NC_010342. 89 RKNYDSAFVNPMRSRQVMVWRREGRERL-P--IERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVLS 157 (159) Q Consensus 89 ~~~~~gaFia~~~~g~~~Vf~R~gk~R~-P--I~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L~ 157 (159) + -.||..+ .|+..+ | -+++.++-..+.-+ ++.-+++++..|+++|+..|+-.|+ T Consensus 60 --------V---E~GHRq~---~g~g~~~~~~gkrlk~~~V~G~fm-l~~s~~e~~~~~~~~~~~~~~~~l~ 116 (116) T protein:vir:10 60 --------L---EYGHRTR---QGTGTSENYRPKPNGISFVPGVFM-LARSVDEMSSIIDDELNQIIIDFWN 116 (116) T ss_pred --------c---cCCceee---CCcceecccccccccCCccCceeh-HHHHHHHHHHHHHHHHHHHHHHhcC Confidence 1 1233221 111100 0 01333333333222 3444567777888888888888888 No 66 >protein:vir:9708 Length: 125 # NCBI annotation: hypothetical protein # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795470;genbank:gi:28876221;genbank:GeneID:1257765 Probab=33.16 E-value=1.4 Score=19.83 Aligned_cols=115 Identities=5% Similarity=0.016 Sum_probs=51.8 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCcc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPRQ 80 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r~ 80 (159) +.+.|......+.++...|+..++.-+...+...+....+=..+.++..|.+. ..+. T Consensus 8 l~~~l~~l~~~~~~~~~~al~~ga~~~~~~~k~~ap~~~~~~~~hl~d~I~~~-----------------------~~k~ 64 (125) T protein:vir:97 8 ILANLTKLEVKAPKTAKAAVTEVAKEFEKALKANTPVYEVETDERLQEDTVIS-----------------------GFKG 64 (125) T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCchhhHHhhhhcc-----------------------cccc Confidence 55555555566666777777776666665555444322111111233332221 1111 Q ss_pred ccc---eeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 81 TVT---GVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARY 154 (159) Q Consensus 81 ~~~---gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~ 154 (159) .+. .+.||-.. ..+|.+..- =-|.++.|=+ |. .+..++...+++.+.+.+.|.++|+- T Consensus 65 ~~~g~~~~~VG~~k-~~~~y~~f~--------E~GT~k~~~~----pF---~~pa~~~~k~~~~~~~~~~~~~~L~l 125 (125) T protein:vir:97 65 ANVGIVSKEIGYGK-ATGWRAHYP--------NDGTIYQRGQ----DF---KERTINQMTPKAKQLYAEKVKEGLGL 125 (125) T ss_pred cccCceEEEEeecC-CCceeEeee--------ccCccCCCcC----cc---chHhHHHhHHHHHHHHHHHHHHHhcC Confidence 111 23333110 123443222 1233332211 22 34455555666777777777777766 No 67 >protein:vir:3617 Length: 112 # NCBI annotation: ORF40 # Family: family:all:180 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112703;genbank:gi:13786571;genbank:GeneID:921069 Probab=31.51 E-value=1.5 Score=19.63 Aligned_cols=102 Identities=10% Similarity=0.094 Sum_probs=40.6 Q ss_pred ChHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCc Q lcl|NC_010342. 1 MPELINATK-KQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPR 79 (159) Q Consensus 1 i~~~l~~~~-~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r 79 (159) +.+++.... ...++++..||..++..+..++.. ...+.-+.+++.+++....++.++.|..+.. T Consensus 10 ld~l~~~L~~~~~~~~~~~al~~~~~~i~~~ak~----~aPvdTG~Lr~si~~~~~~~~~~~~V~~~~~----------- 74 (112) T protein:vir:36 10 IDQLVKHLDKAASLKGVQQVVKSNTSNMTANMQK----LVPVDTGYMKRSIKMELTEGGFSGQAGPHTD----------- 74 (112) T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH----hCCCCchhhhhceeeeecCCceEEEeecCCC----------- Confidence 333333333 223456666677666665555543 3345556777777655433333333322211 Q ss_pred cccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 80 QTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEAR 153 (159) Q Consensus 80 ~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~ 153 (159) | +.|+- .|+ ++.| .=|.+ ...++...++ |.++|+..|+ T Consensus 75 ------------Y-a~~vE---~GT---------~k~~----a~Pfl---~pa~~~~~~~----~~~~i~~~lr 112 (112) T protein:vir:36 75 ------------Y-SAYVE---YGT---------RFQS----AQPFV---KPAYNEQKGV----FIKDLERLLK 112 (112) T ss_pred ------------c-cceee---ccc---------cccC----CCcch---hhhHHHHHHH----HHHHHHHHcC Confidence 1 12221 122 1111 01222 2222322222 3333332222 No 68 >protein:vir:98409 Length: 108 # NCBI annotation: hypothetical protein # Family: family:all:180 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:YP_001210363;genbank:gi:146334932;genbank:GeneID:5114801 Probab=31.23 E-value=1.5 Score=19.60 Aligned_cols=102 Identities=7% Similarity=0.022 Sum_probs=42.2 Q ss_pred ChHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCc Q lcl|NC_010342. 1 MPELINATKK-QLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPR 79 (159) Q Consensus 1 i~~~l~~~~~-~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r 79 (159) +.++.....+ ..+.++..||..++..+..++.. ...+.-+.+++.+.+....++.++.|.++.. T Consensus 6 ld~l~~~l~~~~~~~~~~~al~~~a~~i~~~ak~----~apvdTG~Lr~si~~~~~~~~~~~~V~~~~~----------- 70 (108) T protein:vir:98 6 IDALQKKLRKNATLNDVKHVVKRNTVSMNKNMQN----LAPVDTGNMKRSITSEFTDGGLTGTTIPHTD----------- 70 (108) T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----hCCCCchhhHhhceeeeecCceEEEeecCCC----------- Confidence 4444444433 23455566666666665555443 3455667788877665444444444433211 Q ss_pred cccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|NC_010342. 80 QTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVLS 157 (159) Q Consensus 80 ~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L~ 157 (159) | +.|+ =-|.++.| .=|.+-| .++ ...+.|.+ +|.+.|. T Consensus 71 ------------Y-a~~v------------E~GT~~m~----aqPFl~p---a~~----~~~~~~~~----~i~~~lr 108 (108) T protein:vir:98 71 ------------Y-AGYV------------EYGTRFQA----AQPFVKP---AFD----VQKKIFTN----DLERLTK 108 (108) T ss_pred ------------c-ccee------------eccccccC----CCcchhh---HHH----HHHHHHHH----HHHHHcC Confidence 1 1122 11121111 0122222 222 22222333 3333333 No 69 >protein:vir:100243 Length: 140 # NCBI annotation: gp72 # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355408;genbank:gi:77864698;genbank:GeneID:3725965 Probab=28.38 E-value=1.8 Score=19.25 Aligned_cols=126 Identities=10% Similarity=0.048 Sum_probs=60.3 Q ss_pred ChHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecC-CCcEEEEEEcccccchhhccCC Q lcl|NC_010342. 1 MPELINATKKQL-DTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRI-ADGEVKVWVGLTPLSVHYLGDP 78 (159) Q Consensus 1 i~~~l~~~~~~~-~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~-~~~~~~i~~~~~~i~~~~~g~~ 78 (159) +.+.|...++.+ .+++..|+...+.-+...+...+.. ....+++.|.+.... .+....+.++.+. + . T Consensus 12 l~~~l~~l~~~~~~k~~~~al~~~a~~v~~~ak~~ap~----~tG~l~~sI~~~~~~~~~~~~~~~~~~~~------~-~ 80 (140) T protein:vir:10 12 LQADFLKLAKAQSTKALRRATVAGANVIRDEARARAPK----KTGKLKRNIVTAALKQKDSPGIATAGVRV------R-T 80 (140) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----ChhhHHHhceecccccccccceeEEeecc------c-c Confidence 555566665554 4677788888887777776666543 345777777654322 1111112211100 0 0 Q ss_pred ccccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc Q lcl|NC_010342. 79 RQTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVLSS 158 (159) Q Consensus 79 r~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L~~ 158 (159) ... ......+|.+. |.--|.+. .|=..=....++...+++.+.+.+.|.+||+..++| T Consensus 81 ~~~-------~~~~~~~~y~~--------f~E~GT~~-------~~a~PFl~pA~~~~~~~~~~~~~~~~~~~l~k~~~~ 138 (140) T protein:vir:10 81 KGK-------ADSPNNAFYWR--------FVELGTQF-------MKAEPFMRPAFDASIAQAEGAIRTEIARAIDQVVGG 138 (140) T ss_pred ccc-------cCCCCcccccc--------eeccCcCC-------CCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhc Confidence 000 00011122211 11112221 111111345556666677777777777777777777 Q ss_pred C Q lcl|NC_010342. 159 A 159 (159) Q Consensus 159 a 159 (159) = T Consensus 139 ~ 139 (140) T protein:vir:10 139 G 139 (140) T ss_pred C Confidence 7 No 70 >protein:vir:95372 Length: 124 # NCBI annotation: hypothetical protein # Family: family:all:970 # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764480;genbank:gi:115334634;genbank:GeneID:5179259 Probab=25.77 E-value=2 Score=18.91 Aligned_cols=112 Identities=6% Similarity=-0.018 Sum_probs=56.1 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCcc Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPRQ 80 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r~ 80 (159) |.+.|..+-..+...+..+++.++..+-....+++.+..-.+-+.-.+..+.++...+. .|+.+ .+-.|.|| T Consensus 13 I~~~L~~Ys~~v~~~v~~~v~~vak~a~~~lkk~i~~tspkrTG~YaK~W~~kk~~e~~--~V~nk-~~yqLtHL----- 84 (124) T protein:vir:95 13 ITSQLRKYSQVIADDVEQIMDDVTKEAVGRLKSKIQEVGLVQTGDYMRGWTRKRVPNGW--VIHNK-TEYRLAHL----- 84 (124) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCcccccchhccceeeeecCce--eEEEc-CCCceeee----- Confidence 77778777777877777777777776666666665554444455666666666654332 34432 22222232 Q ss_pred ccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc Q lcl|NC_010342. 81 TVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARYVLSS 158 (159) Q Consensus 81 ~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~~L~~ 158 (159) +..++-. +|| +| +-..|-..| +++.+.+.|+++|.++|+. T Consensus 85 -----------LE~GHAk--r~G----------GR----V~a~pHI~p-----------aee~~~~~l~~~i~~~l~~ 124 (124) T protein:vir:95 85 -----------LEYGHAT--VDG----------GR----VPGTPHIRP-----------IEDWLEKEFEDRVEKAIKQ 124 (124) T ss_pred -----------eecceec--cCC----------cc----cCCccchhH-----------HHHHHHHHHHHHHHHHhcC Confidence 2222211 122 11 111222222 2333344555555555555 No 71 >protein:vir:4906 Length: 114 # NCBI annotation: gp114 # Family: family:all:180 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056684;genbank:gi:9635019;genbank:GeneID:1262668 Probab=23.57 E-value=2.3 Score=18.61 Aligned_cols=105 Identities=12% Similarity=0.168 Sum_probs=38.9 Q ss_pred ChHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCc Q lcl|NC_010342. 1 MPELINATKKQ-LDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPR 79 (159) Q Consensus 1 i~~~l~~~~~~-~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r 79 (159) +.+++....+. -+..+.+++.+++..+...+.........+.-+.+++.+++....+ .+.| T Consensus 9 ld~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~a~~~~p~~TG~Lr~sI~~~~~~~--~~~V---------------- 70 (114) T protein:vir:49 9 LDEMAQSLLKNASPEKRSKVLRKYGSKLKEAAVNRAQFNKGYSTGATRRSITLQVESD--KATV---------------- 70 (114) T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhhceeeeecCC--eeEe---------------- Confidence 44444444322 1334445555555554444444433333445566666655432211 1221 Q ss_pred cccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 80 QTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQ 150 (159) Q Consensus 80 ~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~ 150 (159) |-...-..|+ =-|.+..| .=|.+- ..++....++.+.+.+.|+. T Consensus 71 --------~~~~~Ya~~v------------EfGT~km~----a~Pfl~---PA~~~~~~~~~~~l~~l~k~ 114 (114) T protein:vir:49 71 --------EALTSYSGYL------------EVGTRKME----AQPFMK---PALDEVAPKMVEELAKWDET 114 (114) T ss_pred --------cCCCCcccee------------cccccccC----CCCchh---hhHHHHHHHHHHHHHHHhcC Confidence 1100001122 11222111 113322 33333333444444444444 No 72 >protein:vir:2740 Length: 114 # NCBI annotation: hypothetical protein # Family: family:all:180 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695113;genbank:gi:23455882;genbank:GeneID:955595 Probab=23.57 E-value=2.3 Score=18.61 Aligned_cols=105 Identities=12% Similarity=0.168 Sum_probs=38.9 Q ss_pred ChHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHheeeecCCCcEEEEEEcccccchhhccCCc Q lcl|NC_010342. 1 MPELINATKKQ-LDTAVNRALRGAGQWLRTHSVRELGRELGIVQRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDPR 79 (159) Q Consensus 1 i~~~l~~~~~~-~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~r 79 (159) +.+++....+. -+..+.+++.+++..+...+.........+.-+.+++.+++....+ .+.| T Consensus 9 ld~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~a~~~~p~~TG~Lr~sI~~~~~~~--~~~V---------------- 70 (114) T protein:vir:27 9 LDEMAQSLLKNASPEKRSKVLRKYGSKLKEAAVNRAQFNKGYSTGATRRSITLQVESD--KATV---------------- 70 (114) T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhhceeeeecCC--eeEe---------------- Confidence 44444444322 1334445555555554444444433333445566666655432211 1221 Q ss_pred cccceeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 80 QTVTGVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQ 150 (159) Q Consensus 80 ~~~~gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~ 150 (159) |-...-..|+ =-|.+..| .=|.+- ..++....++.+.+.+.|+. T Consensus 71 --------~~~~~Ya~~v------------EfGT~km~----a~Pfl~---PA~~~~~~~~~~~l~~l~k~ 114 (114) T protein:vir:27 71 --------EALTSYSGYL------------EVGTRKME----AQPFMK---PALDEVAPKMVEELAKWDET 114 (114) T ss_pred --------cCCCCcccee------------cccccccC----CCCchh---hhHHHHHHHHHHHHHHHhcC Confidence 1100001122 11222111 113322 33333333444444444444 No 73 >protein:vir:98342 Length: 125 # NCBI annotation: hypothetical protein # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918934;genbank:gi:119443696;genbank:GeneID:4594504 Probab=20.43 E-value=2.8 Score=18.16 Aligned_cols=110 Identities=8% Similarity=0.069 Sum_probs=38.7 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHheeeecCCCcEEEEEEcccccchhhccCC Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIV--QRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDP 78 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik--~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~ 78 (159) |++.|..+.....+....|+...+.-+. ..+.+..-.. .+.++..|.+. .+ T Consensus 10 L~~~l~~l~~~~~k~~~~Al~aga~~~~----e~l~~~aP~~~~~~hl~d~I~vs-----------------------~~ 62 (125) T protein:vir:98 10 IEQGLKNAVLKMNLNSNVIVKAGAMSLV----PLLKSNTPFANTKKHARDHIAVS-----------------------NV 62 (125) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhCCCCCCCchhhhheeec-----------------------cc Confidence 5555655555555544444433332221 1122211110 01122222221 11 Q ss_pred cccc--c--eeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 79 RQTV--T--GVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARY 154 (159) Q Consensus 79 r~~~--~--gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~ 154 (159) +... . .+.||-- =+.+|.+. |.=-|.+.. +....++...++..+...+.+..||++ T Consensus 63 k~~~~~g~~~v~VG~~-k~~~~~a~--------F~E~GT~k~-----------~a~pF~~~a~~~~~~ev~~~~~~~lrk 122 (125) T protein:vir:98 63 KTDRHTSEKIVTIGYA-KGVSHRIH--------ATEFGTMYQ-----------KPQLFITKTEKQGKNKVLKTMLDTAKR 122 (125) T ss_pred ccccccceEEEEeccC-CCCceEEE--------eccCCccCC-----------CCCchhhHHHHHhHHHHHHHHHHHHHH Confidence 2111 1 1223310 01123221 222233221 222344444444455555566666655 Q ss_pred Hhc Q lcl|NC_010342. 155 VLS 157 (159) Q Consensus 155 ~L~ 157 (159) +++ T Consensus 123 ~~k 125 (125) T protein:vir:98 123 LQK 125 (125) T ss_pred HhC Confidence 555 No 74 >protein:vir:9414 Length: 125 # NCBI annotation: phi PVL orf 11-like protein # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803392;genbank:gi:29028704;genbank:GeneID:1258141 Probab=20.43 E-value=2.8 Score=18.16 Aligned_cols=110 Identities=8% Similarity=0.069 Sum_probs=38.7 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHheeeecCCCcEEEEEEcccccchhhccCC Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIV--QRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDP 78 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik--~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~ 78 (159) |++.|..+.....+....|+...+.-+. ..+.+..-.. .+.++..|.+. .+ T Consensus 10 L~~~l~~l~~~~~k~~~~Al~aga~~~~----e~l~~~aP~~~~~~hl~d~I~vs-----------------------~~ 62 (125) T protein:vir:94 10 IEQGLKNAVLKMNLNSNVIVKAGAMSLV----PLLKSNTPFANTKKHARDHIAVS-----------------------NV 62 (125) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhCCCCCCCchhhhheeec-----------------------cc Confidence 5555655555555544444433332221 1122211110 01122222221 11 Q ss_pred cccc--c--eeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 79 RQTV--T--GVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARY 154 (159) Q Consensus 79 r~~~--~--gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~ 154 (159) +... . .+.||-- =+.+|.+. |.=-|.+.. +....++...++..+...+.+..||++ T Consensus 63 k~~~~~g~~~v~VG~~-k~~~~~a~--------F~E~GT~k~-----------~a~pF~~~a~~~~~~ev~~~~~~~lrk 122 (125) T protein:vir:94 63 KTDRHTSEKIVTIGYA-KGVSHRIH--------ATEFGTMYQ-----------KPQLFITKTEKQGKNKVLKTMLDTAKR 122 (125) T ss_pred ccccccceEEEEeccC-CCCceEEE--------eccCCccCC-----------CCCchhhHHHHHhHHHHHHHHHHHHHH Confidence 2111 1 1223310 01123221 222233221 222344444444455555566666655 Q ss_pred Hhc Q lcl|NC_010342. 155 VLS 157 (159) Q Consensus 155 ~L~ 157 (159) +++ T Consensus 123 ~~k 125 (125) T protein:vir:94 123 LQK 125 (125) T ss_pred HhC Confidence 555 No 75 >protein:vir:81106 Length: 125 # NCBI annotation: hypothetical protein # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429878;genbank:gi:156603931;genbank:GeneID:5525326 Probab=20.43 E-value=2.8 Score=18.16 Aligned_cols=110 Identities=8% Similarity=0.069 Sum_probs=38.7 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHheeeecCCCcEEEEEEcccccchhhccCC Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIV--QRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDP 78 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik--~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~ 78 (159) |++.|..+.....+....|+...+.-+. ..+.+..-.. .+.++..|.+. .+ T Consensus 10 L~~~l~~l~~~~~k~~~~Al~aga~~~~----e~l~~~aP~~~~~~hl~d~I~vs-----------------------~~ 62 (125) T protein:vir:81 10 IEQGLKNAVLKMNLNSNVIVKAGAMSLV----PLLKSNTPFANTKKHARDHIAVS-----------------------NV 62 (125) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhCCCCCCCchhhhheeec-----------------------cc Confidence 5555655555555544444433332221 1122211110 01122222221 11 Q ss_pred cccc--c--eeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 79 RQTV--T--GVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARY 154 (159) Q Consensus 79 r~~~--~--gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~ 154 (159) +... . .+.||-- =+.+|.+. |.=-|.+.. +....++...++..+...+.+..||++ T Consensus 63 k~~~~~g~~~v~VG~~-k~~~~~a~--------F~E~GT~k~-----------~a~pF~~~a~~~~~~ev~~~~~~~lrk 122 (125) T protein:vir:81 63 KTDRHTSEKIVTIGYA-KGVSHRIH--------ATEFGTMYQ-----------KPQLFITKTEKQGKNKVLKTMLDTAKR 122 (125) T ss_pred ccccccceEEEEeccC-CCCceEEE--------eccCCccCC-----------CCCchhhHHHHHhHHHHHHHHHHHHHH Confidence 2111 1 1223310 01123221 222233221 222344444444455555566666655 Q ss_pred Hhc Q lcl|NC_010342. 155 VLS 157 (159) Q Consensus 155 ~L~ 157 (159) +++ T Consensus 123 ~~k 125 (125) T protein:vir:81 123 LQK 125 (125) T ss_pred HhC Confidence 555 No 76 >protein:vir:79988 Length: 125 # NCBI annotation: hypothetical protein # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430006;genbank:gi:156604061;genbank:GeneID:5525448 Probab=20.43 E-value=2.8 Score=18.16 Aligned_cols=110 Identities=8% Similarity=0.069 Sum_probs=38.7 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHheeeecCCCcEEEEEEcccccchhhccCC Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIV--QRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDP 78 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik--~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~ 78 (159) |++.|..+.....+....|+...+.-+. ..+.+..-.. .+.++..|.+. .+ T Consensus 10 L~~~l~~l~~~~~k~~~~Al~aga~~~~----e~l~~~aP~~~~~~hl~d~I~vs-----------------------~~ 62 (125) T protein:vir:79 10 IEQGLKNAVLKMNLNSNVIVKAGAMSLV----PLLKSNTPFANTKKHARDHIAVS-----------------------NV 62 (125) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhCCCCCCCchhhhheeec-----------------------cc Confidence 5555655555555544444433332221 1122211110 01122222221 11 Q ss_pred cccc--c--eeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 79 RQTV--T--GVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARY 154 (159) Q Consensus 79 r~~~--~--gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~ 154 (159) +... . .+.||-- =+.+|.+. |.=-|.+.. +....++...++..+...+.+..||++ T Consensus 63 k~~~~~g~~~v~VG~~-k~~~~~a~--------F~E~GT~k~-----------~a~pF~~~a~~~~~~ev~~~~~~~lrk 122 (125) T protein:vir:79 63 KTDRHTSEKIVTIGYA-KGVSHRIH--------ATEFGTMYQ-----------KPQLFITKTEKQGKNKVLKTMLDTAKR 122 (125) T ss_pred ccccccceEEEEeccC-CCCceEEE--------eccCCccCC-----------CCCchhhHHHHHhHHHHHHHHHHHHHH Confidence 2111 1 1223310 01123221 222233221 222344444444455555566666655 Q ss_pred Hhc Q lcl|NC_010342. 155 VLS 157 (159) Q Consensus 155 ~L~ 157 (159) +++ T Consensus 123 ~~k 125 (125) T protein:vir:79 123 LQK 125 (125) T ss_pred HhC Confidence 555 No 77 >protein:vir:4704 Length: 125 # NCBI annotation: phi PVL ORF 11 homologue # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061636;genbank:gi:9635723;genbank:GeneID:1262995 Probab=20.43 E-value=2.8 Score=18.16 Aligned_cols=110 Identities=8% Similarity=0.069 Sum_probs=38.7 Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHheeeecCCCcEEEEEEcccccchhhccCC Q lcl|NC_010342. 1 MPELINATKKQLDTAVNRALRGAGQWLRTHSVRELGRELGIV--QRPLRQRFRMYSRIADGEVKVWVGLTPLSVHYLGDP 78 (159) Q Consensus 1 i~~~l~~~~~~~~~A~~rAlnrt~~~~~t~~~r~v~~~~~ik--~k~vr~~~~~~~a~~~~~~~i~~~~~~i~~~~~g~~ 78 (159) |++.|..+.....+....|+...+.-+. ..+.+..-.. .+.++..|.+. .+ T Consensus 10 L~~~l~~l~~~~~k~~~~Al~aga~~~~----e~l~~~aP~~~~~~hl~d~I~vs-----------------------~~ 62 (125) T protein:vir:47 10 IEQGLKNAVLKMNLNSNVIVKAGAMSLV----PLLKSNTPFANTKKHARDHIAVS-----------------------NV 62 (125) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhCCCCCCCchhhhheeec-----------------------cc Confidence 5555655555555544444433332221 1122211110 01122222221 11 Q ss_pred cccc--c--eeEEeeEEccCceecccCCCCeeEEEEcCCcccceeeEeeccccchHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|NC_010342. 79 RQTV--T--GVRVGRKNYDSAFVNPMRSRQVMVWRREGRERLPIERVTEEIAELGEAVVRRWERRVEARFIELFEQEARY 154 (159) Q Consensus 79 r~~~--~--gv~~g~~~~~gaFia~~~~g~~~Vf~R~gk~R~PI~~~~ip~~~~~~~v~~~~~~~~~~~~~~~l~~Ei~~ 154 (159) +... . .+.||-- =+.+|.+. |.=-|.+.. +....++...++..+...+.+..||++ T Consensus 63 k~~~~~g~~~v~VG~~-k~~~~~a~--------F~E~GT~k~-----------~a~pF~~~a~~~~~~ev~~~~~~~lrk 122 (125) T protein:vir:47 63 KTDRHTSEKIVTIGYA-KGVSHRIH--------ATEFGTMYQ-----------KPQLFITKTEKQGKNKVLKTMLDTAKR 122 (125) T ss_pred ccccccceEEEEeccC-CCCceEEE--------eccCCccCC-----------CCCchhhHHHHHhHHHHHHHHHHHHHH Confidence 2111 1 1223310 01123221 222233221 222344444444455555566666655 Q ss_pred Hhc Q lcl|NC_010342. 155 VLS 157 (159) Q Consensus 155 ~L~ 157 (159) +++ T Consensus 123 ~~k 125 (125) T protein:vir:47 123 LQK 125 (125) T ss_pred HhC Confidence 555 Done!