Query lcl|NC_010342.1_cdsid_YP_001686739.1 [gene=HAPgp03] [protein=hypothetical protein] [protein_id=YP_001686739.1] [location=2552..3067] Match_columns 171 No_of_seqs 20 out of 23 Neff 4.1 Searched_HMMs 1612 Date Thu Nov 7 12:44:58 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_3 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_3_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:96750 Length: 176 100.0 2E-80 1.3E-83 457.5 19.6 170 1-171 2-175 (176) 2 protein:vir:79544 Length: 70 # 96.6 1.5E-05 9.3E-09 47.0 6.4 65 101-171 1-70 (70) 3 protein:vir:3970 Length: 110 # 21.8 1.8 0.0011 19.2 4.1 78 88-171 1-109 (110) 4 protein:vir:741 Length: 110 # 19.8 2.2 0.0014 18.7 4.2 78 88-171 1-109 (110) 5 protein:vir:3615 Length: 110 # 18.8 2.6 0.0016 18.3 4.3 78 88-171 1-109 (110) 6 protein:vir:5202 Length: 448 # 18.5 3.2 0.002 17.8 7.4 88 1-102 356-448 (448) 7 protein:vir:388 Length: 68 # N 14.8 4.1 0.0026 17.2 6.1 64 104-167 1-68 (68) 8 protein:vir:3419 Length: 68 # 14.6 4.2 0.0026 17.2 5.9 65 104-169 1-68 (68) 9 protein:vir:15 Length: 472 # N 5.8 12 0.0072 14.7 4.8 93 1-106 359-472 (472) 10 protein:vir:2738 Length: 112 # 2.5 27 0.017 12.7 3.9 84 81-171 1-111 (112) No 1 >protein:vir:96750 Length: 176 # NCBI annotation: putative phage-related protein # Family: family:all:3872 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039816;genbank:gi:126010851;genbank:GeneID:5076260 Probab=100.00 E-value=2e-80 Score=457.49 Aligned_cols=170 Identities=48% Similarity=0.831 Sum_probs=163.6 Q ss_pred CCCCeeecCccEEEeecCCCCCCCCceeEEEEEecCceEEEEEEeeCCcEEEEechhhccCcCcCeeEEEEEEEeCCCcE Q lcl|NC_010342. 1 MEPKKLHAGDSVAWGRAVPEYPASDGWALRYVLHGPQVIEIEAFDDHGVYRVEIEASSTEQWSPGQYRWAAFVVGPNDQR 80 (171) Q Consensus 1 t~P~~i~AGdsv~w~~~l~~ypas~~wtL~y~lrg~~~idi~a~a~~~~~~v~~~a~~TA~w~~G~y~w~~~~~~~~~~v 80 (171) .+|.||+|||||+|.++||+|||++||+|+|+||||++|||+++++|++|+|++++++|++|+||+|.|+ +++++++|| T Consensus 2 ~~P~kl~aG~S~s~~~~~~~YPa~~~w~l~~~lrG~~~idl~a~~dg~~~~~~~~a~~Ta~W~pG~Y~y~-~r~~~g~d~ 80 (176) T protein:vir:96 2 SEPIKLQAGDSITWSREAPGYPAEDGWSLHYALRGPAPIDLSTTGDGTVYKVSVSAADSAKWSAGDYVFS-CFVVKGEDR 80 (176) T ss_pred CccceeccccceEEeeccCCCCCCccceeeeeeeCCeeEEEEEeccCceeEEEecCccccccCcCceEEE-EEEeCCcce Confidence 9999999999999999999999999999999999999999999999999999999999999999999887 677888889 Q ss_pred EEecccEEEEEeeccCCCCCCchhHHHHHHHHHHHHHhcccCcceeeEEEcCeeEEeeCHHHHHHHHHHHHHHHHHHhc- Q lcl|NC_010342. 81 YTIDTGNIVIAPNWLLAEPGDVRSHAQRMLDLIEAALEKRIPKDQQSYEIDGQRLDRIPIERLQELRRAYRRELNRERS- 159 (171) Q Consensus 81 ~~v~~G~i~Ilpdla~~~~~D~RshA~k~LdaIeAvie~Rat~dq~~Y~I~gR~L~r~~i~eLlkLr~ry~~evarE~~- 159 (171) ||+++|+|+|+|||+++..||+||||||+||||||+||||||+||++|+||||+|.|+||+||||||++|++||+||+. T Consensus 81 ~~~~~G~i~I~pDla~~~~~D~Rsha~~~LdAIeAvLe~RAt~dQ~~y~IngR~L~rtpI~eLlkLR~~yr~e~arE~~~ 160 (176) T protein:vir:96 81 QTLGTGRLTILPDLAATNPVDARSHAKRMLDAIEATLEKRATRDQQSYEIEGRRLDRIPIPELLKLRDRYRREHQRELEQ 160 (176) T ss_pred eeeccceEEEeechhhcCCCCCchHHHHHHHHHHHHHhccccccceeeEecCeeeeccCHHHHHHHHHHHHHHHHHHhHh Confidence 9999999999999998888899999999999999999999999999999999999999999999999999999999863 Q ss_pred --C-CCCcceeEeeC Q lcl|NC_010342. 160 --G-SPFGRLIQARM 171 (171) Q Consensus 160 --~-~g~Gr~v~Vrf 171 (171) + .++||+||||| T Consensus 161 s~~~~~~g~~v~v~~ 175 (176) T protein:vir:96 161 AGLRPRRQSFIRVSL 175 (176) T ss_pred hcCCCCCCceeEEee Confidence 3 35799999999 No 2 >protein:vir:79544 Length: 70 # NCBI annotation: hypothetical protein # Family: family:all:1547 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272516;genbank:gi:148609385;genbank:GeneID:5204380 Probab=96.60 E-value=1.5e-05 Score=47.02 Aligned_cols=65 Identities=17% Similarity=0.220 Sum_probs=50.4 Q ss_pred CchhHHHHHHHHH----HHHHhcccCcceeeEEEcCeeEEeeCHHHHHHHHHHHHHHHHHHhc-CCCCcceeEeeC Q lcl|NC_010342. 101 DVRSHAQRMLDLI----EAALEKRIPKDQQSYEIDGQRLDRIPIERLQELRRAYRRELNRERS-GSPFGRLIQARM 171 (171) Q Consensus 101 D~RshA~k~LdaI----eAvie~Rat~dq~~Y~I~gR~L~r~~i~eLlkLr~ry~~evarE~~-~~g~Gr~v~Vrf 171 (171) =.+.+++++|++- .||+.+ +||+||||+|.+-+++|+-|-|......+++..+ .+|.++-=-+|| T Consensus 1 mt~e~~~~ml~~yleAE~avl~G------kS~ti~gr~lTre~LseIRkgr~~We~rl~~~~~~r~g~~~~kvarF 70 (70) T protein:vir:79 1 MNQNDIEAMIQRYTEAEMAVLDG------KSVTFNGQQMTMENLSEIRQGRQEWERRLAALITRRRGHPGYRLARF 70 (70) T ss_pred CCHHHHHHHHHHHHHHHHHHHcC------CceeeCCeeecccCHHHHHHHHHHHHHHHHHHhcccCCCCCcccccC Confidence 5677777776653 444444 7899999999999999999999999999998764 345555445788 No 3 >protein:vir:3970 Length: 110 # NCBI annotation: hypothetical protein # Family: family:all:372 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663678;genbank:gi:21716115;genbank:GeneID:951203 Probab=21.78 E-value=1.8 Score=19.16 Aligned_cols=78 Identities=13% Similarity=0.193 Sum_probs=38.3 Q ss_pred EEEEeeccCCCC--CCchhHHHHHHHHHHH-------------------HHh-------cc-cCcceeeEEEcCeeEEee Q lcl|NC_010342. 88 IVIAPNWLLAEP--GDVRSHAQRMLDLIEA-------------------ALE-------KR-IPKDQQSYEIDGQRLDRI 138 (171) Q Consensus 88 i~Ilpdla~~~~--~D~RshA~k~LdaIeA-------------------vie-------~R-at~dq~~Y~I~gR~L~r~ 138 (171) ++|+-++-.... -|. .-+..++..+. +++ +| ..-+..||+.+|.|.... T Consensus 1 M~iL~~vK~~lgi~~D~--lL~~li~~a~~~i~~~l~~~~~~iP~~l~~iv~evav~ryNR~g~EG~~S~SeeG~S~sf~ 78 (110) T protein:vir:39 1 MAITDDLKKLLGGSSDE--RLEVIEKRTRERLLLILSSNIKEVPPELEYVVLDVSLKRFNRIGQEGMQSYSQEGLSMTFS 78 (110) T ss_pred CchHHHHHHhcCCChhH--HHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhccccccccceeecCCeeeeec Confidence 555444421111 121 11111111111 111 33 444799999999999986 Q ss_pred C--HHHHHHHHHHHHHHHHHHhcCCCCcceeEeeC Q lcl|NC_010342. 139 P--IERLQELRRAYRRELNRERSGSPFGRLIQARM 171 (171) Q Consensus 139 ~--i~eLlkLr~ry~~evarE~~~~g~Gr~v~Vrf 171 (171) + +.|-...-++|+.. +..+++.+.| .||| T Consensus 79 ~~d~~~y~~~l~~y~~~-~~~~~~~~~g---~~~f 109 (110) T protein:vir:39 79 ESDFDEYADEIESWRKS-KETEGDKKIG---RFRL 109 (110) T ss_pred ccCcchhHHHHHHHhhh-ccccccCcce---eeee Confidence 4 55666666666532 1112334444 4999 No 4 >protein:vir:741 Length: 110 # NCBI annotation: unknown # Family: family:all:372 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108718;genbank:gi:13487840;genbank:GeneID:920873 Probab=19.82 E-value=2.2 Score=18.68 Aligned_cols=78 Identities=13% Similarity=0.091 Sum_probs=37.1 Q ss_pred EEEEeeccCCCC--CCchhHHHHHHHHHHHH------------------------Hh--cc-cCcceeeEEEcCeeEEee Q lcl|NC_010342. 88 IVIAPNWLLAEP--GDVRSHAQRMLDLIEAA------------------------LE--KR-IPKDQQSYEIDGQRLDRI 138 (171) Q Consensus 88 i~Ilpdla~~~~--~D~RshA~k~LdaIeAv------------------------ie--~R-at~dq~~Y~I~gR~L~r~ 138 (171) ++|+-++-..-. -|. ..+-.++..+.. +. +| ..-++.||+.+|.|.... T Consensus 1 M~~L~~vK~~lgi~~D~--lL~~li~~a~~~i~~~l~~~~~~iP~~l~~iv~evav~ryNR~g~EG~~S~SeeG~S~sf~ 78 (110) T protein:vir:74 1 MAITYEIKKLLGGSSDE--RLEIIEKRTRERLLLILGSDLKEVPPELEYVVLDVSLKRFNRIGQEGMQSYSQEGLSMTFS 78 (110) T ss_pred ChHHHHHHHHcCCChhH--HHHHHHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHhcccCccccceeecCCeeeeec Confidence 555555421110 021 111111111111 11 34 444799999999999986 Q ss_pred C--HHHHHHHHHHHHHHHHHHhcCCCCcceeEeeC Q lcl|NC_010342. 139 P--IERLQELRRAYRRELNRERSGSPFGRLIQARM 171 (171) Q Consensus 139 ~--i~eLlkLr~ry~~evarE~~~~g~Gr~v~Vrf 171 (171) . +.|....-+.|+.. .+.+.+-|+ ..||| T Consensus 79 ~~d~~~y~~~l~~y~~~---~~~~~~~~~-~~~~f 109 (110) T protein:vir:74 79 ESDFDEYADEIESRRKS---KETEGDKKI-GRFRL 109 (110) T ss_pred ccchhhHHHHHHHHHhh---ccccccCcc-eeeee Confidence 4 44544444555532 112233333 66999 No 5 >protein:vir:3615 Length: 110 # NCBI annotation: ORF38 # Family: family:all:372 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112701;genbank:gi:13786569;genbank:GeneID:921067 Probab=18.80 E-value=2.6 Score=18.35 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=38.1 Q ss_pred EEEEeeccCCCC--CCchhHHHHHHH-------------------HHHHHHh-------cc-cCcceeeEEEcCeeEEee Q lcl|NC_010342. 88 IVIAPNWLLAEP--GDVRSHAQRMLD-------------------LIEAALE-------KR-IPKDQQSYEIDGQRLDRI 138 (171) Q Consensus 88 i~Ilpdla~~~~--~D~RshA~k~Ld-------------------aIeAvie-------~R-at~dq~~Y~I~gR~L~r~ 138 (171) ++++-++-.... -|. .-+..++ +.+-+++ +| ..-+..||+.+|.|.... T Consensus 1 M~~L~~vK~~lg~~~D~--lL~~li~~a~~~i~~~~~~~~~eiP~~l~~iv~evav~ryNR~g~EG~~S~SeeG~S~sf~ 78 (110) T protein:vir:36 1 MAITDDLKMLLGGSLDE--RLEVIEKRTRDRLLLILGSDIKEVPPELEYVVLDVSLKRFNRIGQEGMQSYSQEGLSMTFS 78 (110) T ss_pred ChhHHHHHhhcCCChhH--HHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhccccccccceeecCCceeeec Confidence 555444421110 121 1111111 1111111 33 444899999999999885 Q ss_pred C--HHHHHHHHHHHHHHHHHHhcCCCCcceeEeeC Q lcl|NC_010342. 139 P--IERLQELRRAYRRELNRERSGSPFGRLIQARM 171 (171) Q Consensus 139 ~--i~eLlkLr~ry~~evarE~~~~g~Gr~v~Vrf 171 (171) + +.|-...-++|+.. +..+.+.+.|+ ||| T Consensus 79 ~~d~~~y~~~l~~y~~~-~~~~~~~~~g~---~~f 109 (110) T protein:vir:36 79 ESDFDEYADEIESWRKS-RETEGDKKIGR---FRL 109 (110) T ss_pred ccCcchHHHHHHHHHhh-hccccCCccee---eee Confidence 4 45655555666532 11233444444 999 No 6 >protein:vir:5202 Length: 448 # NCBI annotation: major head protein # Family: family:all:4054 # MgeID: mge:116 # MgeName: PZA # Cross-refs: genbank:acc:NP_040725;genbank:gi:9626396;genbank:GeneID:1260967 Probab=18.49 E-value=3.2 Score=17.85 Aligned_cols=88 Identities=10% Similarity=0.129 Sum_probs=40.6 Q ss_pred CCCCeeecCccEEEeecCCCCCCCCceeEEEEEecCce-EEEEEEeeCCcEEEEechhhccCcCcCeeEEEEEEE----e Q lcl|NC_010342. 1 MEPKKLHAGDSVAWGRAVPEYPASDGWALRYVLHGPQV-IEIEAFDDHGVYRVEIEASSTEQWSPGQYRWAAFVV----G 75 (171) Q Consensus 1 t~P~~i~AGdsv~w~~~l~~ypas~~wtL~y~lrg~~~-idi~a~a~~~~~~v~~~a~~TA~w~~G~y~w~~~~~----~ 75 (171) ..++++..|.|.++.-.....-+++ -+..|...|++. .+|. +++ .+++.+..|+. .. +... + T Consensus 356 PttasL~~G~TqqlTATVsg~na~~-~~VTWSvS~ns~~aTVs----ssG-~vTv~a~gTat-----IT--VtATvdts~ 422 (448) T protein:vir:52 356 PNIAAVKQGGKQQFTAYVRATDGKD-HKVVWSVEGGSTGTAIT----GDG-LLSVSGNEENQ-----LT--VKATVDIGT 422 (448) T ss_pred ccceeecCCCeEEEEEEEecCCCCC-CceEEEEcCCceeeEEe----CCc-cEEeccCCcce-----EE--EEEEecCcc Confidence 4557788999988777754322332 335555565543 3452 222 34444433321 11 1111 1 Q ss_pred CCCcEEEecccEEEEEeeccCCCCCCc Q lcl|NC_010342. 76 PNDQRYTIDTGNIVIAPNWLLAEPGDV 102 (171) Q Consensus 76 ~~~~v~~v~~G~i~Ilpdla~~~~~D~ 102 (171) .+..+.++..-.++|.|+-+..+. +. T Consensus 423 a~~~~~vv~ea~VsvtP~~as~G~-q~ 448 (448) T protein:vir:52 423 EDKPNLVVGEAVVSIRPNNASGGA-QA 448 (448) T ss_pred cCCceeeeeeEEEEecCCCCCCcC-CC Confidence 112344554446667776432111 22 No 7 >protein:vir:388 Length: 68 # NCBI annotation: gp3 # Family: family:all:1709 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046898;genbank:gi:9630467;genbank:GeneID:1261642 Probab=14.85 E-value=4.1 Score=17.21 Aligned_cols=64 Identities=20% Similarity=0.286 Sum_probs=39.8 Q ss_pred hHHHHHHHHHHHHHhccc-CcceeeEEEcCeeEEe--eCHHHHHHHHHHHHHHHHHHhcCC-CCccee Q lcl|NC_010342. 104 SHAQRMLDLIEAALEKRI-PKDQQSYEIDGQRLDR--IPIERLQELRRAYRRELNRERSGS-PFGRLI 167 (171) Q Consensus 104 shA~k~LdaIeAvie~Ra-t~dq~~Y~I~gR~L~r--~~i~eLlkLr~ry~~evarE~~~~-g~Gr~v 167 (171) ---+.+|+..|+++-+-- ++.+-+.+=|||+.+. -+|.||.+--..++..+-=-++.+ |.|--| T Consensus 1 M~~~~~L~eAr~AlH~LltG~~Vvsv~~dGr~V~ys~Asi~~L~~YI~~Le~~LG~~~rrR~PaGv~v 68 (68) T protein:vir:38 1 MATQTELDAARAALHDLMMGKRVATVQKDGRRVEFTATSVSDLKKYIADLESQVGTTSRRRGPAGFYV 68 (68) T ss_pred CcHHHHHHHHHHHHHHhhhCceeEEEeeCCcEEEeeecCHHHHHHHHHHHHHHhccCCCccCcccccC Confidence 334566777788777654 3457778889998765 467788777677776665333322 333222 No 8 >protein:vir:3419 Length: 68 # NCBI annotation: head-tail joining protein # Family: family:all:1709 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040582;genbank:gi:9626246;genbank:GeneID:2703525 Probab=14.61 E-value=4.2 Score=17.16 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=41.4 Q ss_pred hHHHHHHHHHHHHHhcccC-cceeeEEEcCeeEEe--eCHHHHHHHHHHHHHHHHHHhcCCCCcceeEe Q lcl|NC_010342. 104 SHAQRMLDLIEAALEKRIP-KDQQSYEIDGQRLDR--IPIERLQELRRAYRRELNRERSGSPFGRLIQA 169 (171) Q Consensus 104 shA~k~LdaIeAvie~Rat-~dq~~Y~I~gR~L~r--~~i~eLlkLr~ry~~evarE~~~~g~Gr~v~V 169 (171) ---+.+|++.|+++-+--+ +.+-+.+=|||+.+. -+|.||.+-...++..+.--++.+||-. |-| T Consensus 1 M~~~~~L~eAr~AlH~LltGk~Vv~v~~dGr~V~ys~Asi~~L~~YI~~Le~~LG~~~r~R~Pag-v~v 68 (68) T protein:vir:34 1 MTRQEELAAARAALHDLMTGKRVATVQKDGRRVEFTATSVSDLKKYIAELEVQTGMTQRRRGPAG-FYV 68 (68) T ss_pred CcHHHHHHHHHHHHHHhhhcceeEEEeeCCcEEEeeecCHHHHHHHHHHHHHHhccCCCccCccc-ccC Confidence 3345677888888776644 467778889998765 5688888777777777664444333322 112 No 9 >protein:vir:15 Length: 472 # NCBI annotation: major head protein # Family: family:all:4054 # MgeID: mge:323 # MgeName: GA-1 # Cross-refs: genbank:acc:NP_073691;swissprot:sw:q9fzw7;genbank:gi:12248115;uniprot:Q9FZW7;genbank:GeneID:919909 Probab=5.82 E-value=12 Score=14.75 Aligned_cols=93 Identities=16% Similarity=0.132 Sum_probs=42.1 Q ss_pred CCCCeeecCcc------------------EEEeecCCCCCCCCceeEEEEEecCceEEEEEEeeCCcEEEEechhhccCc Q lcl|NC_010342. 1 MEPKKLHAGDS------------------VAWGRAVPEYPASDGWALRYVLHGPQVIEIEAFDDHGVYRVEIEASSTEQW 62 (171) Q Consensus 1 t~P~~i~AGds------------------v~w~~~l~~ypas~~wtL~y~lrg~~~idi~a~a~~~~~~v~~~a~~TA~w 62 (171) .--..+..|++ |+|.++ ..-|++.+|+...++- -.-+.+-+++..+..+-+- T Consensus 359 p~~~~~k~g~~~~~~~~~~ti~~~v~~~~v~ws~~-~~~~a~~~yat~~~~~---------N~~~~g~~~~~~~~~~ig~ 428 (472) T protein:vir:15 359 PTVGSLKSGKSLDMEAIIRTITPNVQIEDVEWSLE-NVGLSSAEYATVSITA---------NENKTGAKLVSAQPLPVGG 428 (472) T ss_pred eccccccccceeEEeeeeeccccchhhhhheeehh-hcCCccccceeeEEee---------cCCCccceeeecceeccCC Confidence 00011222333 566655 5556666565544432 2223344444444444443 Q ss_pred CcCeeEEEEEEEeCCCcEEEecccEEEEEeeccC---CCCCCchhHH Q lcl|NC_010342. 63 SPGQYRWAAFVVGPNDQRYTIDTGNIVIAPNWLL---AEPGDVRSHA 106 (171) Q Consensus 63 ~~G~y~w~~~~~~~~~~v~~v~~G~i~Ilpdla~---~~~~D~RshA 106 (171) ..|.- +-+..+...-=..+.-.|.|.||+.+ .++-|+-|-- T Consensus 429 d~~v~---v~~~~~~~nk~v~~e~~i~v~~~~~~~~~~~~~~~~~~~ 472 (472) T protein:vir:15 429 DVRVK---VTVTDPKNNKDIEGEAHISIIPDFNATPIQTPVDPPSGE 472 (472) T ss_pred cccee---eeccCccCCCCccceEEEEEeeCCCCCcccccCCCCCCC Confidence 33321 11122211222355667999999975 2344555543 No 10 >protein:vir:2738 Length: 112 # NCBI annotation: hypothetical protein # Family: family:all:372 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695111;genbank:gi:23455880;genbank:GeneID:955641 Probab=2.51 E-value=27 Score=12.74 Aligned_cols=84 Identities=13% Similarity=0.165 Sum_probs=35.0 Q ss_pred EEecccEEEEEeeccCCCC-CCchhHHHHHHHHHHH----------------------HHh--cc-cCcceeeEEEcCee Q lcl|NC_010342. 81 YTIDTGNIVIAPNWLLAEP-GDVRSHAQRMLDLIEA----------------------ALE--KR-IPKDQQSYEIDGQR 134 (171) Q Consensus 81 ~~v~~G~i~Ilpdla~~~~-~D~RshA~k~LdaIeA----------------------vie--~R-at~dq~~Y~I~gR~ 134 (171) ++++. .+|+-++-.-.. -| -..-+..++..+. ++. +| ..-++.||+.+|.| T Consensus 1 ~~l~~--~~~L~~iK~~lg~~d-D~lL~~ii~~a~~~i~~~l~~~~iP~~l~~Iv~evavkryNR~g~EG~~S~SeeG~S 77 (112) T protein:vir:27 1 MTLDK--DKVIKNVSVDLNTND-DALLKILLERVVNHFKSEYGVEEIDDKLAFIFEDCVIKRFNRRGAEGAKSESVDGHS 77 (112) T ss_pred Ccchh--HHHHHHHHhhcCCCh-hHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhcccCccccceeecCcee Confidence 33222 222222211110 01 0111112221111 111 34 45589999999999 Q ss_pred EEeeC-HHHHHHHHHHHHHHHHHHhcCCCCcceeEeeC Q lcl|NC_010342. 135 LDRIP-IERLQELRRAYRRELNRERSGSPFGRLIQARM 171 (171) Q Consensus 135 L~r~~-i~eLlkLr~ry~~evarE~~~~g~Gr~v~Vrf 171 (171) ..... .+||-.-.+-...-. .+.++.+.|+ ||| T Consensus 78 ~sf~d~~~df~~Y~~~l~~~~-~~~~~~~~G~---v~F 111 (112) T protein:vir:27 78 MSYYDNENEFKPYDDMLQRLY-GTSGQAKEGE---VLF 111 (112) T ss_pred eeecccccchhhhHHHHHHHH-hhcCCCCCce---eee Confidence 99864 344443222222211 1233334444 999 Done!