Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : L-413C | Genbank acc : NC_004745 | Aclame index mge :120

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 9) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 40

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	4	lcl\|Aclame:protein:vir:5694\|NCBI_annot:gpN\|genbank:acc:NP_839853;genbank:gi:30065708;genbank:GeneID:	HHsearch (proba=100.00%)
Portal	1	lcl\|Aclame:protein:vir:5691\|NCBI_annot:gpQ\|genbank:acc:NP_839850;genbank:gi:30065705;genbank:GeneID:	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:5692\|NCBI_annot:gpP\|genbank:acc:NP_839851;genbank:gi:30065706;genbank:GeneID:	Blast (e-value=0)
MTP	22	lcl\|Aclame:protein:vir:5712\|NCBI_annot:FII\|genbank:acc:NP_839871;genbank:gi:30065726;genbank:GeneID:	Blast (e-value=1e-100)
Sheath	21	lcl\|Aclame:protein:vir:5711\|NCBI_annot:gpFI\|genbank:acc:NP_839870;genbank:gi:30065725;genbank:GeneID	HHsearch (proba=100.00%)
Ad1	6	lcl\|Aclame:protein:vir:5696\|NCBI_annot:gpL\|genbank:acc:NP_839855;genbank:gi:30065710;genbank:GeneID:	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	13	lcl\|Aclame:protein:vir:5703\|NCBI_annot:gpS\|genbank:acc:NP_839862;genbank:gi:30065717;genbank:GeneID:	HHsearch (proba=100.00%)
Tc1	12	lcl\|Aclame:protein:vir:5702\|NCBI_annot:gpR\|genbank:acc:NP_839861;genbank:gi:30065716;genbank:GeneID:	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Tc1<->Ad1	6	4
Ne1<->Ad1	7	4

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:5694 protein:vir:2016 protein:vir:6061	L-413C P2 WPhi	100 % 99 % 99 %
Portal	protein:vir:5691 protein:vir:2013 protein:vir:6058	L-413C P2 WPhi	100 % 99 % 99 %
TermL	protein:vir:2014 protein:vir:6059 protein:vir:5692	P2 WPhi L-413C	100 % 100 % 100 %
MTP	protein:vir:5712 protein:vir:2036 protein:vir:6080	L-413C P2 WPhi	100 % 96 % 96 %
Sheath	protein:vir:5711 protein:vir:2035 protein:vir:6079	L-413C P2 WPhi	100 % 95 % 95 %
Ad1	protein:vir:5696 protein:vir:2018 protein:vir:6063	L-413C P2 WPhi	100 % 99 % 99 %
Ne1	protein:vir:5703 protein:vir:6071 protein:vir:2026	L-413C WPhi P2	100 % 99 % 98 %
Tc1	protein:vir:5702 protein:vir:2025 protein:vir:6070	L-413C P2 WPhi	100 % 98 % 98 %