Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : psiM100 | Genbank acc : NC_002628 | Aclame index mge :88

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 35

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	20	lcl\|Aclame:protein:vir:4197\|NCBI_annot:putative	HHsearch (proba=100.00%)
Portal	17	lcl\|Aclame:protein:vir:4194\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	16	lcl\|Aclame:protein:vir:4193\|NCBI_annot:putative	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	21	lcl\|Aclame:protein:vir:4198\|NCBI_annot:unknown\|genbank:acc:NP_071823;genbank:gi:11863106;genbank:Gen	HHsearch (proba=100.00%)
Hc1	22	lcl\|Aclame:protein:vir:4199\|NCBI_annot:unknown\|genbank:acc:NP_071824;genbank:gi:11863107;genbank:Gen	HHsearch (proba=100.00%)
Ne1	23	lcl\|Aclame:protein:vir:4200\|NCBI_annot:unknown\|genbank:acc:NP_071825;genbank:gi:11863108;genbank:Gen	HHsearch (proba=100.00%)
Tc1	24	lcl\|Aclame:protein:vir:4201\|NCBI_annot:unknown\|genbank:acc:NP_071826;genbank:gi:11863109;genbank:Gen	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:99424 protein:vir:78523 protein:vir:78223	BJ1 U2 Bethlehem	17 % 16 % 16 %
Portal	protein:vir:99452 protein:vir:3780 protein:vir:3743	BJ1 HP2 HP1	23 % 20 % 20 %
TermL	protein:vir:95253 protein:vir:94970 protein:vir:97250	Felix 01 Xp15 M6	33 % 23 % 22 %
Hc1	protein:vir:97237 protein:vir:80382 protein:vir:104346	M6 BcepGomr RTP	22 % 18 % 16 %
Ne1	protein:vir:5978 protein:vir:99528 protein:vir:94654	SPP1 Lj928 mu1/6	27 % 28 % 23 %