Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : RR1-A | Genbank acc : NC_021560

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 6) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 68

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	4	lcl\|NC_021560.1_cdsid_YP_008130151.1	HHsearch (proba=100.00%)
Portal	2	lcl\|NC_021560.1_cdsid_YP_008130149.1	HHsearch (proba=100.00%)
TermL	1	lcl\|NC_021560.1_cdsid_YP_008130148.1	Blast (e-value=1e-16)
MTP	NOT FOUND
Sheath	11	lcl\|NC_021560.1_cdsid_YP_008130158.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	14	lcl\|NC_021560.1_cdsid_YP_008130161.1	HHsearch (proba=100.00%)
Tc1	9	lcl\|NC_021560.1_cdsid_YP_008130156.1	HHsearch (proba=81.64%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Tc1	5	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79548	cdtI	29 %
Portal	protein:vir:6382 protein:vir:389 protein:vir:3420	BcepNazgul N15 lambda	23 % 21 % 21 %
TermL	protein:vir:96700 protein:vir:10320 protein:vir:387	VP882 VHML N15	23 % 23 % 23 %
Sheath	protein:vir:4463 protein:vir:4517 protein:vir:489	ST64B V P27	29 % 28 % 27 %
Ne1	protein:vir:3427 protein:vir:96763 protein:vir:396	lambda VP882 N15	21 % 20 % 20 %
Tc1	protein:vir:3428 protein:vir:397 protein:vir:79571	lambda N15 cdtI	17 % 16 % 13 %