Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : pYD38-A | Genbank acc : NC_021534

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 77

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	13	lcl\|NC_021534.1_cdsid_YP_008126177.1	HHsearch (proba=100.00%)
Portal	33	lcl\|NC_021534.1_cdsid_YP_008126197.1	HHsearch (proba=100.00%)
TermL	40	lcl\|NC_021534.1_cdsid_YP_008126204.1	Blast (e-value=5e-63)
MTP	74	lcl\|NC_021534.1_cdsid_YP_008126238.1	Blast (e-value=7e-18)
Sheath	NOT FOUND
Ad1	3	lcl\|NC_021534.1_cdsid_YP_008126167.1	HHsearch (proba=100.00%)
Hc1	2	lcl\|NC_021534.1_cdsid_YP_008126166.1	HHsearch (proba=100.00%)
Ne1	77	lcl\|NC_021534.1_cdsid_YP_008126241.1	HHsearch (proba=100.00%)
Tc1	76	lcl\|NC_021534.1_cdsid_YP_008126240.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Tc1<->Hc1	74	3
Ne1<->Hc1	75	2
Tc1<->Ad1	73	4
Ne1<->Ad1	74	3

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:105778 protein:vir:80068 protein:vir:107687	ES18 B054 T1	33 % 12 % 13 %
Portal	protein:vir:105782 protein:vir:103219 protein:vir:79647	ES18 JK06 TLS	33 % 15 % 14 %
TermL	protein:vir:105705 protein:vir:96782 protein:vir:106641	ES18 phiHSIC 187	36 % 34 % 24 %
MTP	protein:vir:105771 protein:vir:196 protein:vir:93600	ES18 HK97 phi 4795	28 % 25 % 19 %
Ad1	protein:vir:105776	ES18	27 %
Hc1	protein:vir:105774 protein:vir:44	ES18 A118	31 % 7 %
Ne1	protein:vir:105773 protein:vir:105330 protein:vir:107099	ES18 PH15 CNPH82	36 % 25 % 25 %
Tc1	protein:vir:105772 protein:vir:9648 protein:vir:101303	ES18 315.1 phiNM3	21 % 16 % 14 %