Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 12B12 | Genbank acc : NC_021070

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 8) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 51

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	19	lcl\|NC_021070.1_cdsid_YP_007877520.1	HHsearch (proba=100.00%)
Portal	22	lcl\|NC_021070.1_cdsid_YP_007877523.1	HHsearch (proba=100.00%)
TermL	23	lcl\|NC_021070.1_cdsid_YP_007877524.1	Blast (e-value=1e-131)
MTP	NOT FOUND
Sheath	11	lcl\|NC_021070.1_cdsid_YP_007877512.1	HHsearch (proba=100.00%)
Ad1	15	lcl\|NC_021070.1_cdsid_YP_007877516.1	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	14	lcl\|NC_021070.1_cdsid_YP_007877515.1	HHsearch (proba=100.00%)
Tc1	13	lcl\|NC_021070.1_cdsid_YP_007877514.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:99228 protein:vir:79246 protein:vir:1991	DMS3 Phage MP22 Mu	37 % 36 % 34 %
Portal	protein:vir:79233 protein:vir:99232 protein:vir:103860	Phage MP22 DMS3 D3112	28 % 28 % 28 %
TermL	protein:vir:79096 protein:vir:107886 protein:vir:1985	phiE255 BcepMu Mu	50 % 49 % 45 %
Sheath	protein:vir:1996 protein:vir:4517 protein:vir:4463	Mu V ST64B	44 % 36 % 36 %
Ad1	protein:vir:99848 protein:vir:79253 protein:vir:99222	B3 Phage MP22 DMS3	29 % 27 % 27 %
Ne1	protein:vir:1988 protein:vir:103841 protein:vir:99833	Mu D3112 B3	27 % 23 % 23 %
Tc1	protein:vir:1994 protein:vir:96764 protein:vir:10327	Mu VP882 VHML	17 % 15 % 10 %