Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : CGphi29 | Genbank acc : NC_020844

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 5) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 64

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	17	lcl\|NC_020844.1_cdsid_YP_007673699.1	HHsearch (proba=100.00%)
Portal	15	lcl\|NC_020844.1_cdsid_YP_007673697.1	HHsearch (proba=100.00%)
TermL	14	lcl\|NC_020844.1_cdsid_YP_007673696.1	Blast (e-value=1e-119)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	21	lcl\|NC_020844.1_cdsid_YP_007673703.1	HHsearch (proba=100.00%)
Hc1	22	lcl\|NC_020844.1_cdsid_YP_007673704.1	HHsearch (proba=100.00%)
Ne1	24	lcl\|NC_020844.1_cdsid_YP_007673706.1	HHsearch (proba=100.00%)
Tc1	27	lcl\|NC_020844.1_cdsid_YP_007673709.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Tc1<->Hc1	5	3
Tc1<->Ad1	6	4
Ne1<->Tc1	3	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:93742 protein:vir:9820 protein:vir:3033	55 315.4 PhiNIH1.1	17 % 17 % 17 %
Portal	protein:vir:97265 protein:vir:80453 protein:vir:78393	M6 BcepGomr SETP3	25 % 20 % 18 %
TermL	protein:vir:96067 protein:vir:99572 protein:vir:107098	F8 BcepF1 CNPH82	48 % 46 % 23 %
Ad1	protein:vir:97267 protein:vir:80389 protein:vir:95176	M6 BcepGomr PA73	34 % 27 % 25 %
Hc1	protein:vir:107669 protein:vir:78381 protein:vir:97237	T1 SETP3 M6	22 % 23 % 20 %
Ne1	protein:vir:78380 protein:vir:94994 protein:vir:107703	SETP3 KS7 T1	21 % 21 % 18 %
Tc1	protein:vir:79637 protein:vir:104348 protein:vir:103278	TLS RTP JK06	20 % 19 % 17 %