Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : JD001 | Genbank acc : NC_020204

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 68

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	21	lcl\|NC_020204.1_cdsid_YP_007392842.1	HHsearch (proba=100.00%)
Portal	30	lcl\|NC_020204.1_cdsid_YP_007392851.1	HHsearch (proba=100.00%)
TermL	34	lcl\|NC_020204.1_cdsid_YP_007392855.1	Blast (e-value=5e-77)
MTP	NOT FOUND
Sheath	10	lcl\|NC_020204.1_cdsid_YP_007392831.1	HHsearch (proba=100.00%)
Ad1	17	lcl\|NC_020204.1_cdsid_YP_007392838.1	HHsearch (proba=100.00%)
Hc1	12	lcl\|NC_020204.1_cdsid_YP_007392833.1	HHsearch (proba=97.85%)
Ne1	13	lcl\|NC_020204.1_cdsid_YP_007392834.1	HHsearch (proba=100.00%)
Tc1	11	lcl\|NC_020204.1_cdsid_YP_007392832.1	HHsearch (proba=97.91%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad1<->Hc1	5	2
Tc1<->Ad1	6	4

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:103285 protein:vir:104342 protein:vir:79642	JK06 RTP TLS	21 % 20 % 20 %
Portal	protein:vir:94666	mu1/6	19 %
TermL	protein:vir:103223 protein:vir:5248 protein:vir:79648	JK06 Aaphi23 TLS	42 % 37 % 35 %
Sheath	protein:vir:5260 protein:vir:80052 protein:vir:95263	Aaphi23 B054 Felix 01	25 % 20 % 20 %
Ad1	protein:vir:5256 protein:vir:107756 protein:vir:96108	Aaphi23 BcepB1A F8	27 % 20 % 18 %
Hc1	protein:vir:95261 protein:vir:5258 protein:vir:101560	Felix 01 Aaphi23 Bcep43	25 % 20 % 21 %
Ne1	protein:vir:5257 protein:vir:107757 protein:vir:99546	Aaphi23 BcepB1A BcepF1	29 % 25 % 24 %
Tc1	protein:vir:78612 protein:vir:106763 protein:vir:101569	BcepNY3 Bcep1 Bcep43	17 % 16 % 17 %