Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phi8074-B1 | Genbank acc : NC_019924

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 82

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|NC_019924.1_cdsid_YP_007237246.1	HHsearch (proba=100.00%)
Portal	3	lcl\|NC_019924.1_cdsid_YP_007237243.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_019924.1_cdsid_YP_007237242.1	Blast (e-value=1e-101)
MTP	11	lcl\|NC_019924.1_cdsid_YP_007237251.1	Blast (e-value=1e-21)
Sheath	NOT FOUND
Ad1	7	lcl\|NC_019924.1_cdsid_YP_007237247.1	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	9	lcl\|NC_019924.1_cdsid_YP_007237249.1	HHsearch (proba=95.90%)
Tc1	10	lcl\|NC_019924.1_cdsid_YP_007237250.1	HHsearch (proba=95.83%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:96123 protein:vir:1239 protein:vir:3613	37 phi ETA TP901-1	37 % 37 % 37 %
Portal	protein:vir:3964 protein:vir:94546 protein:vir:9922	ul36 phiJL-1 315.6	30 % 29 % 29 %
TermL	protein:vir:106641 protein:vir:9305 protein:vir:78831	187 phi 11 80alpha	47 % 47 % 46 %
MTP	protein:vir:9881 protein:vir:9932 protein:vir:3973	315.5 315.6 ul36	38 % 24 % 22 %
Ad1	protein:vir:9877 protein:vir:94507 protein:vir:4904	315.5 phiJL-1 Sfi11	28 % 27 % 25 %
Ne1	protein:vir:105467 protein:vir:5978 protein:vir:94796	KC5a SPP1 29	18 % 22 % 17 %
Tc1	protein:vir:4907 protein:vir:2741 protein:vir:3972	Sfi11 O1205 ul36	11 % 13 % 17 %