Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiR201 | Genbank acc : NC_019919

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 4) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 146

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	138	lcl\|NC_019919.1_cdsid_YP_007237117.1	HHsearch (proba=100.00%)
Portal	141	lcl\|NC_019919.1_cdsid_YP_007237120.1	HHsearch (proba=100.00%)
TermL	142	lcl\|NC_019919.1_cdsid_YP_007237121.1	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	137	lcl\|NC_019919.1_cdsid_YP_007237116.1	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	135	lcl\|NC_019919.1_cdsid_YP_007237114.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:104256 protein:vir:81227 protein:vir:100135	T5 BFK20 phi1026b	79 % 20 % 18 %
Portal	protein:vir:104259 protein:vir:1884 protein:vir:189	T5 HK022 HK97	91 % 20 % 20 %
TermL	protein:vir:104262 protein:vir:106551 protein:vir:9870	T5 Lj965 315.5	90 % 23 % 22 %
Ad1	protein:vir:104255 protein:vir:1271 protein:vir:4512	T5 phi-105 V	89 % 25 % 22 %
Tc1	protein:vir:104224 protein:vir:79571 protein:vir:3428	T5 cdtI lambda	93 % 22 % 21 %