Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : vB_PaeM_C2-10_Ab1 | Genbank acc : NC_019918

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 158

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	52	lcl\|NC_019918.1_cdsid_YP_007236873.1	HHsearch (proba=100.00%)
Portal	48	lcl\|NC_019918.1_cdsid_YP_007236869.1	HHsearch (proba=100.00%)
TermL	47	lcl\|NC_019918.1_cdsid_YP_007236868.1	Blast (e-value=1e-83)
MTP	NOT FOUND
Sheath	57	lcl\|NC_019918.1_cdsid_YP_007236878.1	HHsearch (proba=100.00%)
Ad1	53	lcl\|NC_019918.1_cdsid_YP_007236874.1	HHsearch (proba=100.00%)
Hc1	55	lcl\|NC_019918.1_cdsid_YP_007236876.1	HHsearch (proba=100.00%)
Ne1	54	lcl\|NC_019918.1_cdsid_YP_007236875.1	HHsearch (proba=100.00%)
Tc1	56	lcl\|NC_019918.1_cdsid_YP_007236877.1	HHsearch (proba=97.23%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:95258 protein:vir:10324 protein:vir:98480	Felix 01 VHML VWB	29 % 27 % 15 %
Portal	protein:vir:95254 protein:vir:108215 protein:vir:78161	Felix 01 Giles Min1	39 % 22 % 19 %
TermL	protein:vir:95253 protein:vir:94970 protein:vir:97250	Felix 01 Xp15 M6	40 % 20 % 19 %
Sheath	protein:vir:95263 protein:vir:80052 protein:vir:5260	Felix 01 B054 Aaphi23	27 % 22 % 20 %
Ad1	protein:vir:95259	Felix 01	28 %
Hc1	protein:vir:95261 protein:vir:5258 protein:vir:107716	Felix 01 Aaphi23 BcepB1A	20 % 21 % 17 %
Ne1	protein:vir:5257 protein:vir:94069 protein:vir:78607	Aaphi23 OP2 BcepNY3	28 % 28 % 28 %
Tc1	protein:vir:3637 protein:vir:101569 protein:vir:78612	Bcep781 Bcep43 BcepNY3	21 % 22 % 19 %