Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : vB_VpaS_MAR10 | Genbank acc : NC_019713

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 5) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 107

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	34	lcl\|NC_019713.1_cdsid_YP_007111880.1	HHsearch (proba=100.00%)
Portal	31	lcl\|NC_019713.1_cdsid_YP_007111877.1	HHsearch (proba=100.00%)
TermL	30	lcl\|NC_019713.1_cdsid_YP_007111876.1	Blast (e-value=5e-25)
MTP	39	lcl\|NC_019713.1_cdsid_YP_007111885.1	Blast (e-value=3e-21)
Sheath	NOT FOUND
Ad1	36	lcl\|NC_019713.1_cdsid_YP_007111882.1	HHsearch (proba=100.00%)
Hc1	37	lcl\|NC_019713.1_cdsid_YP_007111883.1	HHsearch (proba=98.23%)
Ne1	42	lcl\|NC_019713.1_cdsid_YP_007111888.1	HHsearch (proba=100.00%)
Tc1	38	lcl\|NC_019713.1_cdsid_YP_007111884.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Hc1	5	2
Ne1<->Ad1	6	3
Ne1<->Tc1	4	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:3613 protein:vir:739 protein:vir:80930	TP901-1 Tuc2009 A500	20 % 19 % 17 %
Portal	protein:vir:94956 protein:vir:80453 protein:vir:95149	Xp15 BcepGomr PA73	30 % 22 % 22 %
TermL	protein:vir:94991 protein:vir:78394 protein:vir:102238	KS7 SETP3 PBI1	25 % 24 % 18 %
MTP	protein:vir:97240 protein:vir:95133 protein:vir:80398	M6 PA73 BcepGomr	22 % 22 % 20 %
Ad1	protein:vir:97267 protein:vir:95176 protein:vir:80389	M6 PA73 BcepGomr	31 % 27 % 21 %
Hc1	protein:vir:95145 protein:vir:97237 protein:vir:80382	PA73 M6 BcepGomr	23 % 25 % 13 %
Ne1	protein:vir:103280 protein:vir:95157 protein:vir:80425	JK06 PA73 BcepGomr	24 % 23 % 23 %
Tc1	protein:vir:80429 protein:vir:97211 protein:vir:95155	BcepGomr M6 PA73	24 % 24 % 19 %