Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiCP34O | Genbank acc : NC_019508

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 52

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	12	lcl\|NC_019508.1_cdsid_YP_007005339.1	HHsearch (proba=100.00%)
Portal	4	lcl\|NC_019508.1_cdsid_YP_007005331.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_019508.1_cdsid_YP_007005329.1	Blast (e-value=2e-14)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	14	lcl\|NC_019508.1_cdsid_YP_007005341.1	HHsearch (proba=95.42%)
Hc1	15	lcl\|NC_019508.1_cdsid_YP_007005342.1	HHsearch (proba=90.74%)
Ne1	5	lcl\|NC_019508.1_cdsid_YP_007005332.1	HHsearch (proba=99.85%)
Tc1	16	lcl\|NC_019508.1_cdsid_YP_007005343.1	HHsearch (proba=84.32%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Hc1	10	2
Ne1<->Ad1	9	3
Ne1<->Tc1	11	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:102605 protein:vir:105822 protein:vir:7990	Llij PMC Che8	31 % 31 % 30 %
Portal	protein:vir:102330 protein:vir:79043 protein:vir:96839	phi CD119 phiC2 EW	25 % 24 % 24 %
TermL	protein:vir:97448 protein:vir:95058 protein:vir:94499	92 X2 88	45 % 45 % 45 %
Ad1	protein:vir:78068 protein:vir:97329 protein:vir:94798	P35 52A 29	19 % 31 % 31 %
Hc1	protein:vir:5977 protein:vir:100134 protein:vir:80342	SPP1 phi1026b phi644-2	13 % 11 % 16 %
Ne1	protein:vir:102085 protein:vir:102875 protein:vir:107568	Fah Cherry Gamma	29 % 29 % 29 %
Tc1	protein:vir:10368 protein:vir:1244 protein:vir:97070	Xp10 phi ETA OP1	16 % 14 % 15 %